Main:Manual

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Manuals

Program Name Description
hisatgenotype.py Analysis of a whole human genome
hisatgenotype_locus.py Analysis of a specific gene, genomic region, or gene family
hisatgenotype_build_genome.py Building a genotype genome
hisatgenotype_extract_vars.py Extraction of variants, haplotypes, etc.
hisatgenotype_extract_reads.py Extraction of reads that belong to genomic regions of interest
hisatgenotype_locus_samples.py Analysis of many samples
hisat2 / hisat2-build / hisat2-inspect HISAT2 binaries