People:SameerChavan

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Perform typing for HLA-A, HLA-B, HLA-C, HLA-DQA1, HLA-DQB1, and HLA-DRB1 using the following command,

 hla-analysis$ hisat-genotype-top/hisatgenotype_scripts/hisat2_test_HLA_genotyping_CP.py -p 4 --num-editdist 2 --hla-list A,B,C,DQA1,DQB1,DRB1 HLA.genomes > CP_HLA.txt


 hla-analysis$ hisat-genotype-top/hisatgenotype_scripts/compare_HLA_Omixon.py cp_80_hla.txt omixon_cp_hla.txt