People and Collaborations
Current and former students:
- JHU
- Guangyu Yang (Ph.D. Candidate, Computer Science; 2015-present)
- Li Song (Ph.D. candidate, Computer Science; 2012-present)
- Apaala Chaterjee (Research Assistant, JHU Bioinformatics, Fall 2015)
- Dhruv Shankar (Summer intern, IGM, 2015)
- Ankur Sundara (Summer intern, IGM, 2015)
- Daniela Perry (Summer intern, IGM, 2014)
- Philip Yu (Summer intern, IGM, 2013)
- Veronica Lee (Summer intern, IGM, 2013; co-advised with Stefan Canzar)
- Kalliopi Drakos (Summer intern, IGM, 2012)
- GWU
- Leming Zhou (D.Sc., Computer Science; current: Assistant Professor, University of Pittsburgh)
- Waqar Ahmad (M.Sc., Computer Science; currrent: Project Manager, Astor \& Sanders)
I have also been fortunate to have collaborated with the following scientists (reverse chronological order, mostly):
- Steven Salzberg, Johns Hopkins University, genome assembly and annotation
- Sorin Istrail, Brown University, genome comparison, vaccine design
- Brian Walenz, J. Craig Venter Institute, cDNA-to-genome alignments
- Leming Zhou, University of Pittsburgh, spaced seeds
- Ajit Kumar, George Washington University, viral miRNAs
- Michael McClelland, Vaccine Research Institute of San Diego, bacterial genomics
- Webb Miller, Penn State University, alignments
... and many others!
Back to the Research page.