Site Map

News and updates

    New releases and related tools will be announced through the Bowtie mailing list.

Getting Help

Releases

Indexes

H. sapiens, UCSC hg19 7.0 GB
M. musculus, UCSC mm10 6.4 GB

The current version of HISAT does not use some of the files in the index, so the actual memory requirement is much lower than the index size. For example, the memory footprint of HISAT for the human genome is about 4.3GB.

Related Tools

  • Bowtie2: Ultrafast read alignment
  • TopHat2: Spliced read mapper for RNA-Seq
  • Cufflinks: Isoform assembly and quantitation for RNA-Seq
  • StringTie: Transcript assembly and quantification for RNA-Seq

Publications

Contributors

Links

Frequently Asked Questions