00001 00002 // Copyright (c) 2003, The Institute for Genomic Research (TIGR), Rockville, 00003 // Maryland, U.S.A. All rights reserved. 00005 #ifndef _MAIN_H 00006 #define _MAIN_H 00007 00008 #include "CustomScore.h" 00009 00010 class InputData; 00011 class Options; 00012 00017 class Main { 00018 public: 00027 Main() { } 00028 void 00029 run(Options&, CustomScore*, InputData&, const string&,const string&, const string&); 00030 00031 private: 00032 static void mgenes(const InputData&,const string&, std::ostream&, bool, CustomScore*,const Options&, const string&); 00033 }; 00034 00035 #endif // _MAIN_H