getScore(unsigned, dsu::Strand_t strnd) const (defined in RegionPrediction) | RegionPrediction | [inline] |
getScores(dsu::Strand_t strnd) const (defined in RegionPrediction) | RegionPrediction | [inline] |
getSeq() const (defined in RegionPrediction) | RegionPrediction | [inline] |
getTypeStr() const (defined in RegionPrediction) | RegionPrediction | |
hasStart(dsu::Strand_t strnd) const | RegionPrediction | [inline] |
hasStop(dsu::Strand_t strnd) const | RegionPrediction | [inline] |
insert(const PlaceHolder *) | RegionPrediction | [virtual] |
is_igr(const RegionPrediction &, const RegionPrediction &, dsu::Strand_t, int) (defined in RegionPrediction) | RegionPrediction | [static] |
is_intron(const RegionPrediction &, const RegionPrediction &, dsu::Strand_t) (defined in RegionPrediction) | RegionPrediction | [static] |
isAccpBndry(dsu::Strand_t strnd) const | RegionPrediction | [inline] |
isDonrBndry(dsu::Strand_t strnd) const | RegionPrediction | [inline] |
isEndOfSeq() const | RegionPrediction | [inline] |
isValid(EvScores::Bnd_t, dsu::Strand_t) const (defined in RegionPrediction) | RegionPrediction | |
isValidAcceptorSignals(dsu::Strand_t strnd) const (defined in RegionPrediction) | RegionPrediction | [inline] |
isValidDonorSignals(dsu::Strand_t strnd) const (defined in RegionPrediction) | RegionPrediction | [inline] |
noData() const (defined in RegionPrediction) | RegionPrediction | |
noStrndData(dsu::Strand_t) const (defined in RegionPrediction) | RegionPrediction | |
print(std::ostream &, const CustomScore &) const (defined in RegionPrediction) | RegionPrediction | [virtual] |
RegionPrediction(const SeqLoc &, const string &) (defined in RegionPrediction) | RegionPrediction | |
score(const CustomScore &, const string &) | RegionPrediction | |
scoreHelp(const string &, dsu::Strand_t) (defined in RegionPrediction) | RegionPrediction | |
setScores(dsu::Strand_t, const EvScores &) (defined in RegionPrediction) | RegionPrediction | |
storeRelaventData(InputData::const_iterator &, const InputData::const_iterator &) (defined in RegionPrediction) | RegionPrediction | |
~RegionPrediction() (defined in RegionPrediction) | RegionPrediction | |