_cutOff (defined in Options) | Options | |
_dtFile (defined in Options) | Options | |
_exonDistrFile (defined in Options) | Options | |
_forceModels (defined in Options) | Options | |
_hmmFile (defined in Options) | Options | |
_matrixFile (defined in Options) | Options | |
_outputGeneModelFile (defined in Options) | Options | |
_subEnd3 (defined in Options) | Options | |
_subEnd5 (defined in Options) | Options | |
_train (defined in Options) | Options | |
_trainOffSet (defined in Options) | Options | |
_vecFile (defined in Options) | Options | |
createInstance(int argc, char **argv, const string &id) (defined in Options) | Options | [inline, static] |
doTraining() const (defined in Options) | Options | [inline] |
getInstance() (defined in Options) | Options | [inline, static] |
isExonDistr() const | Options | [inline] |
isLinComb() const (defined in Options) | Options | [inline] |
isVerbose() const (defined in Options) | Options | [inline] |
m_evidenceListFile (defined in Options) | Options | |
m_fastaFile (defined in Options) | Options | |
main(int, char **) | Options | [friend] |
Options(int argc, char **argv, const string &) (defined in Options) | Options | [protected] |
quit (defined in Options) | Options | |
setIntronFalse() (defined in Options) | Options | [inline] |
useIntron() const (defined in Options) | Options | [inline] |