candidate fusion list

1. chr20-chr17 ff (confirmed)

MCF7	BCAS4	chr20	49411707	BCAS3	chr17	59430946	9	3	9
MCF7	BCAS4	chr20	49411707	BCAS3	chr17	59445685	106	116	167

2. chr20-chr20 fr (confirmed)

MCF7

ARFGEF2

chr20

47538545

SULF2

chr20

46365686

17

11

9

3. chr17-chr17 ff (confirmed)

MCF7

RPS6KB1

chr17

57992061

TMEM49

chr17

57917126

4

2

1

4. chr20-chr20 rf

MCF7	SULF2	chr20	46415145	ENSG00000171940	chr20	52210297	22	18	27
MCF7	SULF2	chr20	46415146	ENSG00000171940	chr20	52210647	11	18	14

5. chr17-chr17 ff

MCF7

ENSG00000224738

chr17

57184949

TMEM49

chr17

57915653

5

3

3

6. chr2-chr17 rr

MCF7

LRP1B

chr2

142237963

PLXDC1

chr17

37265642

2

3

2

7. chr2-chr5 rf

MCF7

ENSG00000226505

chr2

70329650

MRPL36

chr5

1799907

5

14

1

sample list

table description

MCF7 chr2-chr17 142237963 37265642 rr

2 3 2 0 24 26
GGTGTCTTGGACTGCCCAGATGGGTATGACGAAGGAGTACATTGTCAGGG AGGACAACCACAGCTATTATGTGTCCCGTCTCTATGGCCCCAGCGAGCCC
00000000000000000000000000222222222222222222222222 22222222222222222222222222000000000000000000000000
LRP1B exon89(142237963-142238101) PLXDC1 exon12(37265499-37265643)

blast search - human genome

left

>ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 primary reference assembly
          Length = 243199373

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                   
Query: 1         ggtgtcttggactgcccagatgggtatgacgaaggagtacattgtcaggg 50
                 ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142238013 ggtgtcttggactgcccagatgggtatgacgaaggagtacattgtcaggg 142237964


>ref|AC_000134.1| Homo sapiens chromosome 2, alternate assembly HuRef, whole genome shotgun
                 sequence
          Length = 234808360

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                   
Query: 1         ggtgtcttggactgcccagatgggtatgacgaaggagtacattgtcaggg 50
                 ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134228846 ggtgtcttggactgcccagatgggtatgacgaaggagtacattgtcaggg 134228797


>ref|AC_000045.1| Homo sapiens chromosome 2, alternate assembly Hs_Celera, whole genome shotgun
                 sequence
          Length = 236827137

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                   
Query: 1         ggtgtcttggactgcccagatgggtatgacgaaggagtacattgtcaggg 50
                 ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135950439 ggtgtcttggactgcccagatgggtatgacgaaggagtacattgtcaggg 135950390

right

>ref|NC_000017.10| Homo sapiens chromosome 17, GRCh37.p2 primary reference assembly
          Length = 81195210

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                  
Query: 1        aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37265643 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 37265594


>ref|AC_000149.1| Homo sapiens chromosome 17, alternate assembly HuRef, whole genome shotgun
                sequence
          Length = 76567021

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                  
Query: 1        aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33061168 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 33061119


>ref|AC_000060.1| Homo sapiens chromosome 17, alternate assembly Hs_Celera, whole genome
                shotgun sequence
          Length = 77819263

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                  
Query: 1        aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33926460 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 33926411

blast search - nt

left

>ref|XM_001156822.1| PREDICTED: Pan troglodytes low density lipoprotein-related protein
            1B, transcript variant 1 (LRP1B), mRNA
          Length = 16532

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 1    ggtgtcttggactgcccagatgggtatgacgaaggagtacattgtcagg 49
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1266 ggtgtcttggactgcccagatgggtatgacgaaggagtacattgtcagg 1314


>ref|XM_515817.2| PREDICTED: Pan troglodytes low density lipoprotein-related protein
           1B, transcript variant 2 (LRP1B), mRNA
          Length = 15796

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                            
Query: 1   ggtgtcttggactgcccagatgggtatgacgaaggagtacattgtcagg 49
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ggtgtcttggactgcccagatgggtatgacgaaggagtacattgtcagg 578


>ref|NM_018557.2| Homo sapiens low density lipoprotein receptor-related protein 1B
            (LRP1B), mRNA
          Length = 16557

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 1    ggtgtcttggactgcccagatgggtatgacgaaggagtacattgtcagg 49
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1267 ggtgtcttggactgcccagatgggtatgacgaaggagtacattgtcagg 1315


>gb|AF176832.1|AF176832 Homo sapiens low density lipoprotein receptor related protein-deleted
            in tumor (LRPDIT) mRNA, complete cds
          Length = 16556

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 1    ggtgtcttggactgcccagatgggtatgacgaaggagtacattgtcagg 49
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1267 ggtgtcttggactgcccagatgggtatgacgaaggagtacattgtcagg 1315


>ref|XM_001117994.2| PREDICTED: Macaca mulatta low density lipoprotein receptor-related
            protein 1B (LRP1B), mRNA
          Length = 16519

 Score = 89.7 bits (45), Expect = 1e-15
 Identities = 48/49 (97%)
 Strand = Plus / Plus

                                                             
Query: 1    ggtgtcttggactgcccagatgggtatgacgaaggagtacattgtcagg 49
            |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1258 ggtgtcttggactgcccagacgggtatgacgaaggagtacattgtcagg 1306

right

>ref|XM_002827668.1| PREDICTED: Pongo abelii plexin domain-containing protein 1-like
           (LOC100461206), mRNA
          Length = 3033

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 609


>ref|NM_020405.4| Homo sapiens plexin domain containing 1 (PLXDC1), mRNA
          Length = 6271

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 518


>dbj|AK303699.1| Homo sapiens cDNA FLJ58221 complete cds, highly similar to Plexin
           domain-containing protein 1 precursor
          Length = 2082

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 205


>gb|EU832116.1| Synthetic construct Homo sapiens clone HAIB:100067145;
           DKFZo008C0625 plexin domain containing 1 protein
           (PLXDC1) gene, encodes complete protein
          Length = 1546

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 328


>gb|EU832210.1| Synthetic construct Homo sapiens clone HAIB:100067239;
           DKFZo004C0626 plexin domain containing 1 protein
           (PLXDC1) gene, encodes complete protein
          Length = 1546

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 328


>dbj|AK312999.1| Homo sapiens cDNA, FLJ93462, highly similar to Homo sapiens plexin
           domain containing 1 (PLXDC1), mRNA
          Length = 1537

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 340


>gb|AC004408.2| Homo sapiens chromosome 17, clone RP5-906A24, complete sequence
          Length = 113250

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                              
Query: 1    aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8392 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 8343


>ref|XM_001172534.1| PREDICTED: Pan troglodytes similar to tumor endothelial marker
           7-secreted 1 precursor, transcript variant 1
           (LOC454623), mRNA
          Length = 1126

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 333


>ref|XM_001172579.1| PREDICTED: Pan troglodytes similar to tumor endothelial marker
           7-secreted 1 precursor, transcript variant 3
           (LOC454623), mRNA
          Length = 1386

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 593


>ref|XM_511448.2| PREDICTED: Pan troglodytes similar to tumor endothelial marker
           7-secreted 1 precursor, transcript variant 5
           (LOC454623), mRNA
          Length = 3003

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 593


>ref|XM_001172555.1| PREDICTED: Pan troglodytes similar to tumor endothelial marker
           7-secreted 1 precursor, transcript variant 2
           (LOC454623), mRNA
          Length = 1311

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 518


>ref|XM_001172591.1| PREDICTED: Pan troglodytes similar to tumor endothelial marker
           7-secreted 1 precursor, transcript variant 4
           (LOC454623), mRNA
          Length = 2964

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 518


>gb|AY704672.1| Homo sapiens tumor endothelial marker 7-intracellular precursor
           (TEM7) mRNA, complete cds; alternatively spliced
          Length = 2630

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 334


>gb|AY704671.1| Homo sapiens tumor endothelial marker 7-secreted 2 precursor (TEM7)
           mRNA, complete cds; alternatively spliced
          Length = 2884

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 388


>gb|AY704670.1| Homo sapiens tumor endothelial marker 7-secreted 1 precursor (TEM7)
           mRNA, complete cds; alternatively spliced
          Length = 2684

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 388


>dbj|AK127539.1| Homo sapiens cDNA FLJ45632 fis, clone CHONS2001834, highly  similar
           to Homo sapiens tumor endothelial marker 7 precursor
           (TEM7)
          Length = 2604

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 335


>dbj|AK093589.1| Homo sapiens cDNA FLJ36270 fis, clone THYMU2003046, highly similar
           to Plexin domain-containing protein 1 precursor
          Length = 2722

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 539


>gb|BC036059.1| Homo sapiens plexin domain containing 1, mRNA (cDNA clone MGC:33667
           IMAGE:5298499), complete cds
          Length = 2405

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 484


>gb|AC091178.7| Homo sapiens chromosome 17, clone CTD-2206N4, complete sequence
          Length = 99268

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                               
Query: 1     aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
             ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90598 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 90549


>gb|AF378753.1|AF378753 Homo sapiens tumor endothelial marker 3 precursor (TEM7) mRNA,
           complete cds
          Length = 6140

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 388


>gb|AF279144.2|AF279144 Homo sapiens tumor endothelial marker 7 precursor (TEM7) mRNA,
           complete cds
          Length = 2320

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 388


>ref|XM_002800444.1| PREDICTED: Macaca mulatta plexin domain containing 1 (PLXDC1), mRNA
          Length = 2196

 Score = 83.8 bits (42), Expect = 6e-14
 Identities = 48/50 (96%)
 Strand = Plus / Plus

                                                             
Query: 1   aggacaaccacagctattatgtgtcccgtctctatggccccagcgagccc 50
           ||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 150 aggacaaccacagttattatgtgtcccgtctctatggccccagtgagccc 199

reads

chr2 chr2 142567887 142238092 41m329745n9m                   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||GTCCCGAGG
chr2 chr2 142567870 142238075 24m329745n26m                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||GTCCCGAGGAGGTAGAAATCAAGTGC
chr2 chr2 142567867 142238072 21m329745n29m                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||GTCCCGAGGAGGTAGAAATCAAGTGCCCC
chr2 chr2 142567851 142238056 5m329745n45m                   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||GTCCCGAGGAGGTAGAAATCAAGTGCCCCTTGAATCACATTGCTT
chr2 chr2 142238101 142238051 50m                                                                                                                                                                                              GTCCCGAGGAGGTAGAAATCAAGTGCCCCTTGAATCACATTGCTTGCCTT
chr2 chr2 142238097 142238047 50m                                                                                                                                                                                                  CGAGGAGGTAGAAATCAAGTGCCCCTTGAATCACATTGCTTGCCTTGGTA
chr2 chr2 142238094 142238044 50m                                                                                                                                                                                                     GGAGGTAGAAATCAAGTGCCCCTTGAATCACATTGCTCGCCTTGGTACCA
chr2 chr2 142238090 142238040 50m                                                                                                                                                                                                         GTAGAAATCAAGTGCCCCTTGAATCACATTGCTTGCCTTGGTACCAACAA
chr2 chr2 142238086 142238036 50m                                                                                                                                                                                                             AAATCAAGTGCCCCTTGAATCACATTGCTTGCCTTGGTACCAACAAATGT
chr2 chr2 142238071 142238021 50m                                                                                                                                                                                                                            TGAATCACATTGCTTGCCTTGGTACCAACAAATGTGTTCATTTATCCCAG
chr2 chr2 142238066 142238016 50m                                                                                                                                                                                                                                 CACATTGCTTGCCTTGGTACCAACAAATGTGTTCATTTATCCCAGCTGTG
chr2 chr2 142238062 142238012 50m                                                                                                                                                                                                                                     TTGCTTGCCTTGGTACCAACAAATGTGTTCATTTATCCCAGCTGTGCAAT
chr2 chr2 142238058 142238008 50m                                                                                                                                                                                                                                         TTGCCTTGGTACCAACAAATGTGTTCATTTATCCCAGCTGTGCAATGGCG
chr2 chr2 142238046 142237996 50m                                                                                                                                                                                                                                                     CAACAAATGTGTTCATTTATCCCAGCTGTGCAATGGTGTCTTGGACTGCC
chr2 chr2 142238043 142237993 50m                                                                                                                                                                                                                                                        CAAATGTGTTCATTTATCCCAGCTGTGCAATGGTGTCTTGGACTGCCCAG
chr2 chr2 142238028 142237978 50m                                                                                                                                                                                                                                                                       ATCCCAGCTGTGCAATGGTGTCTTGGACTGCCCAGATGGGTATGACGAAG
chr2 chr2 142238025 142237975 50m                                                                                                                                                                                                                                                                          CCAGCTGTGCAATGGTGTCTTGGACTGCCCAGATGGGTATGACGAAGGAG
chr2 chr2 142238019 142237969 50m                                                                                                                                                                                                                                                                                GTGCAATGGTGTCTTGGACTGCCCAGATGGGTATGACGAAGGAGTACATT
chr2 chr2 142238014 142237964 50m                                                                                                                                                                                                                                                                                     ATGGTGTCTTGGACTGCCCAGATGGGTATGACGAAGGAGTACATTGTCAG
chr2 chr17 142237986 37265616 24m37265642F26m                                                                                                                                                                                                                                                                                                     TGACGAAGGAGTACATTGTCAGGG AGGACAACCACAGCTATTATGTGTCC
chr2 chr17 142237986 37265616 24m37265642F26m                                                                                                                                                                                                                                                                                                     TGACGAAGGAGTACATTGTCAGGG AGGACAACCACAGCTATTATGTGTCC
chr17 chr17 37265645 37265595 50m                                                                                                                                                                                                                                                                                                                                       GGGAGGACAACCACAGCTATTATGTGTCCCGTCTCTATGGCCCCAGCGAG
chr17 chr17 37265629 37265579 50m                                                                                                                                                                                                                                                                                                                                                       CTATTATGTGTCCCGTCTCTATGGTCCCAGCGAGCCCCACAGCCGGGAAC
chr17 chr17 37265609 37265559 50m                                                                                                                                                                                                                                                                                                                                                                           ATGGCCCCAGCGAGCCCCACAGCCGGGAACTGTGGGTAGATGTGGCCGAG
chr17 chr17 37265606 37265556 50m                                                                                                                                                                                                                                                                                                                                                                              GCCCCAGCGAGCCCCACAGCCGGGAACTGTGGGTAGATGTGGCCGAGGCC
chr17 chr17 37265582 37265532 50m                                                                                                                                                                                                                                                                                                                                                                                                      AACTGTGGGTAGATGTGGCCGAGGCCAACCGGAGCCAAGTGAAGATCCAC
chr17 chr17 37265570 37265520 50m                                                                                                                                                                                                                                                                                                                                                                                                                  ATGTGGCCGAGGCCAACCGGAGCCAAGTGAAGATCCACACAATACTCTCC
chr17 chr17 37265563 37265513 50m                                                                                                                                                                                                                                                                                                                                                                                                                         CGAGGCCAACCGGAGCCAAGTGAAGATCCACACAATACTCTCCAACACCC
chr17 chr17 37265556 37265506 50m                                                                                                                                                                                                                                                                                                                                                                                                                                AACCGGAGCCAAGTGAAGATCCACACAATACTCTCCAACACCCACCGGCA

3 pairs

74:-4
85:-2
89:-4

MCF7 chr20-chr20 47538545 46365686 fr

17 11 9 0 37 37
TGAAGCGGCCCCAGCACTCCCAGCTGCGCAGGGCCTGCCAGGTGGCGCTC GGTTCCATGCAGGTGATGAACAAGACCCGGCGCATCATGGAGCAGGGCGG
00000000000001123335666666778889999999999999999999 99999999999999999999999999999996533110000000000000
ARFGEF2 exon1(47538273-47538546) SULF2 exon19(46365445-46365685)

blast search - human genome

left

>ref|NC_000020.10| Homo sapiens chromosome 20, GRCh37.p2 primary reference assembly
          Length = 63025520

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47538497 tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 47538546


>ref|AC_000152.1| Homo sapiens chromosome 20, alternate assembly HuRef, whole genome shotgun
                sequence
          Length = 59656706

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44290015 tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 44290064


>ref|AC_000063.1| Homo sapiens chromosome 20, alternate assembly Hs_Celera, whole genome
                shotgun sequence
          Length = 59605541

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44243113 tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 44243162

right

>ref|NC_000020.10| Homo sapiens chromosome 20, GRCh37.p2 primary reference assembly
          Length = 63025520

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                  
Query: 1        ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46365687 ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 46365638


>ref|AC_000152.1| Homo sapiens chromosome 20, alternate assembly HuRef, whole genome shotgun
                sequence
          Length = 59656706

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                  
Query: 1        ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43107380 ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 43107331


>ref|AC_000063.1| Homo sapiens chromosome 20, alternate assembly Hs_Celera, whole genome
                shotgun sequence
          Length = 59605541

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                  
Query: 1        ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43079378 ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 43079329

blast search - nt

left

>ref|XM_003134493.1| PREDICTED: Sus scrofa brefeldin A-inhibited guanine
           nucleotide-exchange protein 2-like (LOC100523411), mRNA
          Length = 1399

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 120


>ref|XM_002912990.1| PREDICTED: Ailuropoda melanoleuca ADP-ribosylation factor guanine
           nucleotide-exchange factor 2 (brefeldin A-inhibited)
           (ARFGEF2), mRNA
          Length = 6451

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 120


>ref|XM_002798127.1| PREDICTED: Macaca mulatta ADP-ribosylation factor guanine
           nucleotide-exchange factor 2 (brefeldin A-inhibited)
           (ARFGEF2), mRNA
          Length = 5801

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 297


>dbj|AK343304.1| Sus scrofa mRNA, clone:ADR010031D02, expressed in adrenal gland
          Length = 1937

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 291


>ref|NG_011490.1| Homo sapiens ADP-ribosylation factor guanine nucleotide-exchange
            factor 2 (brefeldin A-inhibited) (ARFGEF2), RefSeqGene on
            chromosome 20
          Length = 121956

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5223 tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 5272


>gb|BC144625.1| Homo sapiens cDNA clone IMAGE:9053156
          Length = 5681

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 183


>gb|BC144626.1| Homo sapiens cDNA clone IMAGE:9053157
          Length = 6436

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 183


>ref|NM_006420.2| Homo sapiens ADP-ribosylation factor guanine nucleotide-exchange
           factor 2 (brefeldin A-inhibited) (ARFGEF2), mRNA
          Length = 9004

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 272


>ref|XM_534448.2| PREDICTED: Canis familiaris similar to Brefeldin A-inhibited
           guanine nucleotide-exchange protein 2 (Brefeldin
           A-inhibited GEP 2) (LOC477256), mRNA
          Length = 6444

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 217


>gb|BC050449.1| Homo sapiens ADP-ribosylation factor guanine nucleotide-exchange
           factor 2 (brefeldin A-inhibited), mRNA (cDNA clone
           IMAGE:6187759), partial cds
          Length = 2650

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 272


>emb|AL049537.48| Human DNA sequence from clone RP5-1164I10 on chromosome 20q13.13-13.2
             Contains part of the BIG2 gene for brefeldin A-inhibited
             guanine nucleotide-exchange protein 2, ESTs, STSs, GSSs
             and two CpG islands, complete sequence
          Length = 110028

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                               
Query: 1     tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
             ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32460 tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 32509


>gb|AF084521.1|AF084521 Homo sapiens brefeldin A-inhibited guanine nucleotide-exchange
           protein 2 mRNA, complete cds
          Length = 5860

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 120


>ref|XM_002692495.1| PREDICTED: Bos taurus cytohesin 1-like (ARFGEF2), mRNA
          Length = 8868

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                             
Query: 1   tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
           |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 71  tgaagcggcctcagcactcccagctgcgcagggcctgccaggtggcgctc 120


>ref|XM_586261.4| PREDICTED: Bos taurus cytohesin 1-like, transcript variant 1
           (ARFGEF2), mRNA
          Length = 8869

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                             
Query: 1   tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
           |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 71  tgaagcggcctcagcactcccagctgcgcagggcctgccaggtggcgctc 120


>gb|BC158012.1| Mus musculus ADP-ribosylation factor guanine nucleotide-exchange
           factor 2 (brefeldin A-inhibited), mRNA (cDNA clone
           MGC:189963 IMAGE:9088150), complete cds
          Length = 7182

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                             
Query: 1   tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
           |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 200 tgaagcggccccagcactcccagctgcgtagggcctgccaggtggcgctc 249


>ref|NM_001085495.2| Mus musculus ADP-ribosylation factor guanine nucleotide-exchange
           factor 2 (brefeldin A-inhibited) (Arfgef2), mRNA
          Length = 8777

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                             
Query: 1   tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
           |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 tgaagcggccccagcactcccagctgcgtagggcctgccaggtggcgctc 254


>ref|NM_181083.2| Rattus norvegicus ADP-ribosylation factor guanine
           nucleotide-exchange factor 2 (brefeldin A-inhibited)
           (Arfgef2), mRNA
 gb|AY255526.2| Rattus norvegicus Brefeldin A-inhibited guanine nucleotide-exchange
           factor 2 (Big2) mRNA, complete cds
          Length = 5784

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                             
Query: 1   tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
           |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 71  tgaagcggccccagcactcccagctgcgtagggcctgccaggtggcgctc 120


>dbj|AK087920.2| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
           full-length enriched library, clone:E330040L22
           product:hypothetical protein, full insert sequence
          Length = 2622

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                             
Query: 1   tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
           |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 202 tgaagcggccccagcactcccagctgcgtagggcctgccaggtggcgctc 251


>dbj|AK153722.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A630061I07 product:Similar to
           ADP-ribosylation factor guanine nucleotide-exchange
           factor 2 (Brefeldin A-inhibited) (Fragment) homolog
           [Homo sapiens], full insert sequence
          Length = 2511

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                             
Query: 1   tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
           |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 199 tgaagcggccccagcactcccagctgcgtagggcctgccaggtggcgctc 248


>dbj|AK087574.1| Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN
           full-length enriched library, clone:E230011G24
           product:unclassifiable, full insert sequence
          Length = 3963

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                             
Query: 1   tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
           |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 209 tgaagcggccccagcactcccagctgcgtagggcctgccaggtggcgctc 258


>emb|AL591703.14| Mouse DNA sequence from clone RP23-448P12 on chromosome 2 Contains the
             Trp53tk gene for Trp53 regulating kinase, the 5' end of
             the Arfgef2 gene for ADp-ribosylation factor guanine
             nucleotide-exchange factor 2 (brefeldin A-inhibited) and
             two CpG islands, complete sequence
          Length = 89080

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                               
Query: 1     tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
             |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 84550 tgaagcggccccagcactcccagctgcgtagggcctgccaggtggcgctc 84599


>ref|XM_001379067.1| PREDICTED: Monodelphis domestica similar to ADP-ribosylation factor
           guanine nucleotide-exchange factor 2 (brefeldin
           A-inhibited) (LOC100029328), mRNA
          Length = 5535

 Score = 89.7 bits (45), Expect = 1e-15
 Identities = 48/49 (97%)
 Strand = Plus / Plus

                                                            
Query: 2   gaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
           |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 72  gaagcggccccagcactcccagctgcgcagagcctgccaggtggcgctc 120


>ref|XM_001916930.1| PREDICTED: Equus caballus ADP-ribosylation factor guanine
           nucleotide-exchange factor 2 (brefeldin A-inhibited)
           (ARFGEF2), mRNA
          Length = 5918

 Score = 83.8 bits (42), Expect = 6e-14
 Identities = 49/50 (98%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                             
Query: 1   tgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctc 50
           ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 206 tgaagcggccccagcactcccagctgcgcagggcctg-caggtggcgctc 254


>ref|XM_001165517.1| PREDICTED: Pan troglodytes ADP-ribosylation factor guanine
           nucleotide-exchange factor 2, transcript variant 1
           (ARFGEF2), mRNA
          Length = 8901

 Score = 73.8 bits (37), Expect = 6e-11
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                    
Query: 1   tgaagcggccccagcactcccagctgcgcagggcctgccag 41
           |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 71  tgaagcggccccagcactcccagctgcgcagggcctcccag 111


>ref|XM_001165554.1| PREDICTED: Pan troglodytes ADP-ribosylation factor guanine
           nucleotide-exchange factor 2, transcript variant 2
           (ARFGEF2), mRNA
          Length = 8910

 Score = 73.8 bits (37), Expect = 6e-11
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                    
Query: 1   tgaagcggccccagcactcccagctgcgcagggcctgccag 41
           |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 71  tgaagcggccccagcactcccagctgcgcagggcctcccag 111


>ref|XM_001165620.1| PREDICTED: Pan troglodytes ADP-ribosylation factor guanine
           nucleotide-exchange factor 2, transcript variant 4
           (ARFGEF2), mRNA
          Length = 8859

 Score = 73.8 bits (37), Expect = 6e-11
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                    
Query: 1   tgaagcggccccagcactcccagctgcgcagggcctgccag 41
           |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 71  tgaagcggccccagcactcccagctgcgcagggcctcccag 111


>ref|XM_001165584.1| PREDICTED: Pan troglodytes ADP-ribosylation factor guanine
           nucleotide-exchange factor 2, transcript variant 3
           (ARFGEF2), mRNA
          Length = 8859

 Score = 73.8 bits (37), Expect = 6e-11
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                    
Query: 1   tgaagcggccccagcactcccagctgcgcagggcctgccag 41
           |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 71  tgaagcggccccagcactcccagctgcgcagggcctcccag 111

right

>ref|XM_002830395.1| PREDICTED: Pongo abelii extracellular sulfatase Sulf-2-like
           (LOC100435119), mRNA
          Length = 3969

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 692


>ref|XM_001106412.2| PREDICTED: Macaca mulatta sulfatase 2 (SULF2), mRNA
          Length = 4648

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 1154


>gb|GQ129317.1| Synthetic construct Homo sapiens clone HAIB:100068463;
           DKFZo004B0434 sulfatase 2 protein (SULF2) gene, partial
           cds
          Length = 2656

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 246


>ref|NM_001161841.1| Homo sapiens sulfatase 2 (SULF2), transcript variant 3, mRNA
          Length = 4248

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 893


>ref|NM_198596.2| Homo sapiens sulfatase 2 (SULF2), transcript variant 2, mRNA
          Length = 4239

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 893


>ref|NM_018837.3| Homo sapiens sulfatase 2 (SULF2), transcript variant 1, mRNA
          Length = 3909

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 554


>gb|EU832773.1| Synthetic construct Homo sapiens clone HAIB:100067802;
           DKFZo008B0433 sulfatase 2 protein (SULF2) gene, encodes
           complete protein
          Length = 2656

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 246


>gb|EU832139.1| Synthetic construct Homo sapiens clone HAIB:100067168;
           DKFZo008E0525 sulfatase 2 protein (SULF2) gene, encodes
           complete protein
          Length = 2656

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 246


>gb|EU832232.1| Synthetic construct Homo sapiens clone HAIB:100067261;
           DKFZo004E0526 sulfatase 2 protein (SULF2) gene, encodes
           complete protein
          Length = 2656

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 246


>dbj|AB384154.1| Synthetic construct DNA, clone: pF1KSDA1247, Homo sapiens SULF2
           gene for extracellular sulfatase Sulf-2 precursor,
           complete cds, without stop codon, in Flexi system
          Length = 2651

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 251


>dbj|AK308829.1| Homo sapiens cDNA, FLJ98870
          Length = 1636

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 545


>ref|XM_001148908.1| PREDICTED: Pan troglodytes similar to extracellular sulfatase SULF-2
            (LOC744295), mRNA
          Length = 1753

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 1278


>ref|NM_001048090.1| Canis lupus familiaris sulfatase 2 (SULF2), mRNA
 tpe|BN000766.1| TPA_inf: Canis familiaris mRNA for sulfatase 2 (sulf2 gene)
          Length = 2610

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 224


>gb|AY358461.1| Homo sapiens clone DNA48606 GPPS559 (UNQ559) mRNA, complete cds
          Length = 3906

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 831


>emb|AL354813.31| Human DNA sequence from clone CTD-2653D5 on chromosome 20 Contains part
             of the gene for a novel protein similar to
             glucosamine-6-sulfatases (SULF2) (sulfatase 2, H-SULF2,
             KIAA1247), complete sequence
          Length = 93156

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                               
Query: 1     ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 50
             ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66552 ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 66503


>emb|CR749319.1| Homo sapiens mRNA; cDNA DKFZp313E091 (from clone DKFZp313E091)
          Length = 3945

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 837


>gb|AY101176.1| Homo sapiens extracellular sulfatase SULF-2 mRNA, complete cds
          Length = 4279

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 893


>gb|BC110538.1| Homo sapiens cDNA clone IMAGE:40035474, containing frame-shift
           errors
          Length = 2838

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 320


>gb|BC110539.1| Homo sapiens sulfatase 2, mRNA (cDNA clone MGC:126411
           IMAGE:40035480), complete cds
          Length = 2837

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 320


>dbj|AB033073.2| Homo sapiens mRNA for KIAA1247 protein, partial cds
          Length = 4397

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggttccatgcaggtgatgaacaagacccggcgcatcatggagcagggcgg 554


>ref|XM_002747629.1| PREDICTED: Callithrix jacchus sulfatase 2 (SULF2), mRNA
          Length = 2601

 Score = 85.7 bits (43), Expect = 2e-14
 Identities = 46/47 (97%)
 Strand = Plus / Plus

                                                          
Query: 1   ggttccatgcaggtgatgaacaagacccggcgcatcatggagcaggg 47
           |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 175 ggttccatgcaggtgatgaacaagacccggcgcatcatggcgcaggg 221

reads

chr20 chr20 47538228 47538278 50M                            TCACGTGGTCACGTGACGCGCTCCAACATGGAG
chr20 chr20 47538285 47538335 50M                                                                    GGGGCCGAGGTGTCGCTTCCTGACGGGGCGGCGCGGACGGACGCGGCCCG
chr20 chr20 47538296 47538346 50M                                                                               GTCGCTTCCTGACGGGGCGGCGCGGACGGACGCGGCCGGTGCCGGCCGGC
chr20 chr20 47538304 47538354 50M                                                                                       CTGACGGGGCGGCGCGGACGGACGCGGCCGGTGCCGGCCGGGACGCCGGG
chr20 chr20 47538316 47538366 50M                                                                                                   CGCGGACGGACGCGGCCGGTGCCGGCCGGGACGCCGGGCCCGCAGCCTAG
chr20 chr20 47538321 47538371 50M                                                                                                        ACGGACGCGGCCGGTGCCGGCCGGGACGCCGGGCCCGCAGCCTAGCTCGC
chr20 chr20 47538335 47538385 50M                                                                                                                      TGCCGGCCGGGACGCCGGGCCCGCAGCCTAGCTCGCCATCTCGCTCACGC
chr20 chr20 47538340 47538390 50M                                                                                                                           GCCGGGACGCCGGGCCCGCAGCCTAGCTCGCCATCTCGCTCACGCCGCCC
chr20 chr20 47538347 47538397 50M                                                                                                                                  CGCCGGGCCCGCAGCCTAGCTCGCCATCTCGCTCACGCCGCCCGCCCGCG
chr20 chr20 47538352 47538402 50M                                                                                                                                       GGCCCGCAGCCTAGCTCGCCATCTCGCTCACGCCGCCCGCCCGCGGGGCC
chr20 chr20 47538356 47538406 50M                                                                                                                                           CGCAGCCTAGCTCGCCATCTCGCTCACGCCGCCCGCCCGCGGGGCCGTCA
chr20 chr20 47538363 47538413 50M                                                                                                                                                  TAGCTCGCCATCTCGCTCACGCCGCCCGCCCGCGGGGCCGTCAGCCCCCG
chr20 chr20 47538366 47538416 50M                                                                                                                                                     CTCGCCATCTCGCTCACGCCGCCCGCCCGCGGGGCCGTCAGCCCCCGCCG
chr20 chr20 47538376 47538426 50M                                                                                                                                                               CGCTCACGCCGCCCGCCCGCGGGGCCGTCAGCCCCCGCCGGGCCGGGGCC
chr20 chr20 47538382 47538432 50M                                                                                                                                                                     CGCCGCCCGCCCGCGGGGCCGTCAGCCCCCGCCGGGCCGGGGCCATGCAG
chr20 chr20 47538387 47538437 50M                                                                                                                                                                          CCCGCCCGCGGGGCCGTCAGCCCCCGCCGGGCCGGGGCCATGCAGGAGAG
chr20 chr20 47538391 47538441 50M                                                                                                                                                                              CCCGCGGGGCCGTCAGCCCCCGCCGGGCCGGGGCCATGCAGGAGAGCCAG
chr20 chr20 47538394 47538444 50M                                                                                                                                                                                 GCGGGGCCGTCAGCCCCCGCCGGGCCGGGGCCATGCAGGAGAGCCAGACC
chr20 chr20 47538399 47538449 50M                                                                                                                                                                                      GCCGTCAGCCCCCGCCGGGCCGGGGCCATGCAGGAGAGCCAGACCAAGAG
chr20 chr20 47538404 47538454 50M                                                                                                                                                                                           CAGCCCCCGCCGGGCCGGGGCCATGCAGGAGAGCCAGACCAAGAGCATGT
chr20 chr20 47538411 47538461 50M                                                                                                                                                                                                  CGCCGGGCCGGGGCCATGCAGGAGAGCCAGACCAAGAGCATGTTCGTGTC
chr20 chr20 47538414 47538464 50M                                                                                                                                                                                                     CGGGCCGGGGCCATGCAGGAGAGCCAGACCAAGAGCATGTTCGTGTCCCA
chr20 chr20 47538417 47538467 50M                                                                                                                                                                                                        GCCGGGGCCATGCAGGAGAGCCAGACCAAGAGCATGTTCGTGTCCCGGAC
chr20 chr20 47538424 47538474 50M                                                                                                                                                                                                               CCATGCAGGAGAGCCAGACCAAGAGCATGTTCGTGTCCCGGGCCCTGGAG
chr20 chr20 47538428 47538478 50M                                                                                                                                                                                                                   GCAGGAGAGCCAGACCAAGAGCATGTTCGTGTCCCGGGCCCTGGAGAAGA
chr20 chr20 47538432 47538482 50M                                                                                                                                                                                                                       GAGAGCCAGACCAAGAGCATGTTCGTGTCCCGGGCCCTGGAGAAGATCCT
chr20 chr20 47538442 47538492 50M                                                                                                                                                                                                                                 CCAAGAGCATGTTCGTGTCCCGGGCCCTGGAGAAGATCCTAGCCGACAAG
chr20 chr20 47538445 47538495 50M                                                                                                                                                                                                                                    AGAGCATGTTCGTGTCCCGGGCCCTGGAGAAGATCCTAGCCGACAAGGAG
chr20 chr20 47538448 47538498 50M                                                                                                                                                                                                                                       GCATGTTCGTGTCCCGGGCCCTGGAGAAGATCCTAGCCGACAAGGAGGTG
chr20 chr20 47538451 47538501 50M                                                                                                                                                                                                                                          TGTTCGTGTCCCGGGCCCTGGAGAAGATCCTAGCCGACAAGGAGGTGAAG
chr20 chr20 47538454 47538504 50M                                                                                                                                                                                                                                             TCGTGTCCCGGGCCCTGGAGAAGATCCTAGCCGACAAGGAGGTGAAGCGG
chr20 chr20 47538458 47538508 50M                                                                                                                                                                                                                                                 GTCCCGGGCCCTGGAGAAGATCCTAGCCGACAAGGAGGTGAAGCGGCCCC
chr20 chr20 47538462 47538512 50M                                                                                                                                                                                                                                                     CGGGCCCTGGAGAAGATCCGAGCCGACAAGGAGGGGAAGCGGCCCCAGCA
chr20 chr20 47538466 47538516 50M                                                                                                                                                                                                                                                         CCCTGGAGAAGATCCTAGCCGACAAGGAGGTGAAGCGGCCCCAGCACTCC
chr20 chr20 47538469 47538519 50M                                                                                                                                                                                                                                                            TGGAGAAGATCCTAGCCGACAAGGAGGTGAAGCGGCCCCAGCACTCCCAG
chr20 chr20 47538473 47538523 50M                                                                                                                                                                                                                                                                GAAGATCCTAGCCGACAAGGAGGTGAAGCGGCCCCAGCACTCCCAGCTGC
chr20 chr20 47538480 47538530 50M                                                                                                                                                                                                                                                                       CTAGCCGACAAGGAGGTGAAGCGGCCCCAGCACTCCCAGCTGCGCAGGCC
chr20 chr20 47538483 47538533 50M                                                                                                                                                                                                                                                                          GCCGACAAGGAGGTGAAGCGGCCCCAGCACTCCCAGCTGCGCAGGGCCTG
chr20 chr20 47538488 47538538 50M                                                                                                                                                                                                                                                                               CAAGGAGGTGAAGCGGCCCCAGCACTCCCAGCTGCGCAGGGCCTGCCAGG
chr20 chr20 47538491 47538541 50M                                                                                                                                                                                                                                                                                  GGAGGTGAAGCGGCCCCAGCACTCCCAGCTGCGCAGGGCCTGCCAGGTGG
chr20 chr20 47538494 47538544 50M                                                                                                                                                                                                                                                                                     GGTGAAGCGGCCCCAGCACTCCCAGCTGCGCAGGGCCTGCCAGGTGGCGC
chr20 chr20 47538499 47538549 50M                                                                                                                                                                                                                                                                                          AGCGGCCCCAGCACTCCCAGCTGCGCAGGGCCTGCCAGGTGGCGCTCGAT
chr20 chr20 47538504 46365678 42M46365686F8m                                                                                                                                                                                                                                                                                    CCCCAGCACTCCCAGCTGCGCAGGGCCTGCCAGGTGGCGCTC GGTTCCAT
chr20 chr20 47538506 46365676 40M46365686F10m                                                                                                                                                                                                                                                                                     CCAGCACTCCCAGCTGCGCAGGGCCTGCCAGGTGGCGCTC GGTTCCATGC
chr20 chr20 47538507 46365675 39M46365686F11m                                                                                                                                                                                                                                                                                      CAGCACTCCCAGCTGCGCAGGGCCTGCCAGGTGGCGCTC GGTTCCATGCA
chr20 chr20 47538509 46365673 37M46365686F13m                                                                                                                                                                                                                                                                                        GCACTCCCAGCTGCGCAGGGCCTGCCAGGTGGCGCTC GGTTCCATGCAGG
chr20 chr20 47538511 46365671 35M46365686F15m                                                                                                                                                                                                                                                                                          ACTCCCAGCTGCGCAGGGCCTGCCAGGTGGCGCTC GGTTCCATGTAGGTG
chr20 chr20 47538512 46365670 34M46365686F16m                                                                                                                                                                                                                                                                                           CTCCCAGCTGCGCAGGGCCTGCCAGGTGGCGCTC GGTTCCATGCAGGTGA
chr20 chr20 47538515 46365667 31M46365686F19m                                                                                                                                                                                                                                                                                              CCAGCTGCGCAGGGCCTGCCAGGTGGCGCTC GGTTCCATGCAGGTGATGA
chr20 chr20 47538515 46365667 31M46365686F19m                                                                                                                                                                                                                                                                                              CCAGCTGCGCAGGGCCTGCCAGGTGGCGCTC GGTTCCATGCAGGTGATGA
chr20 chr20 47538516 46365666 30M46365686F20m                                                                                                                                                                                                                                                                                               CAGCTGCGCAGGGCCTGCCAGGTGGCGCTC GGTTCCATGCAGGTGATGAA
chr20 chr20 47538522 46365660 24M46365686F26m                                                                                                                                                                                                                                                                                                     CGCAGGGCCTGCCAGGTGGCGCTC GGTTCCATGCAGGTGATGAACAAGAC
chr20 chr20 47538524 46365658 22M46365686F28m                                                                                                                                                                                                                                                                                                       CAGGGCCTGCCAGGTGGCGCTC GGTTCCATGCAGGTGATGAACAAGACCC
chr20 chr20 47538527 46365655 19M46365686F31m                                                                                                                                                                                                                                                                                                          GGCCTGCCAGGTGGCGCTC GGTTCCATGCAGGTGATGAACAAGACCCGAC
chr20 chr20 47538527 46365655 19M46365686F31m                                                                                                                                                                                                                                                                                                          GGCCTGCCAGGTGGCGCTC GGTTCCATGCAGGTGATGAACAAGACCCGGC
chr20 chr20 47538527 46365655 19M46365686F31m                                                                                                                                                                                                                                                                                                          GGCCTGCCAGGTGGCGCTC GGTTCCATGCAGGTGATGAACAAGACCCGGC
chr20 chr20 47538528 46365654 18M46365686F32m                                                                                                                                                                                                                                                                                                           GCCTGCCAGGTGGCGCTC GGTTCCATGCAGGTGATGAACAAGACCCGGCG
chr20 chr20 47538529 46365653 17M46365686F33m                                                                                                                                                                                                                                                                                                            CCTGCCAGGTGGCGCTC GGTTCCATGCAGGTGATGAACAAGACCCGGCGC
chr20 chr20 47538529 46365653 17M46365686F33m                                                                                                                                                                                                                                                                                                            CCTGCCAGGTGGCGCTC GGTTCCATGCAGGTGATGAACAAGACCCGGCGC
chr20 chr20 47538531 46365651 15M46365686F35m                                                                                                                                                                                                                                                                                                              TGCCAGGTGGCGCTC GGTTCCATGCAGGTGATGAACAAGACCCGGCGCAT
chr20 chr20 47538531 46365651 15M46365686F35m                                                                                                                                                                                                                                                                                                              TGCCAGGTGGCGCTC GGTTCCATGCAGGTGATGAACAAGACCCGGCGCAT
chr20 chr20 47538533 46365649 13M46365686F37m                                                                                                                                                                                                                                                                                                                CCAGGTGGCGCTC GGTTCCATGCAGGTGATGAACAAGACCCGGCGCATCA
chr20 chr20 47538537 46365645 9M46365686F41m                                                                                                                                                                                                                                                                                                                     GTGGCGCTC GGTTCCATGCAGGTGATGAACAAGACCCGGCGCATCATGGA
chr20 chr20 47538541 46365641 5M46365686F45m                                                                                                                                                                                                                                                                                                                         CGCTC GGTTCCATGCAGGTGATGAACAAGACCCGGCGCATCATGGAGCAG
chr20 chr20 47538541 46365641 5M46365686F45m                                                                                                                                                                                                                                                                                                                         CGCTC GGTTCCATGCAGGTGATGAACAAGACCCGGCGCATCATGGAGCAG
chr20 chr20 47538541 46365641 5M46365686F45m                                                                                                                                                                                                                                                                                                                         CGCTC GGTTCCATGCAGGTGATGAACAAGACCCGGCGCATCATGGCGCAG
chr20 chr20 47538542 46365640 4M46365686F46m                                                                                                                                                                                                                                                                                                                          GCTG GGTTCCATGCAGGTGATGAACAAGACCCGGCGCATCATGGAGCAGG
chr20 chr20 47538543 46365639 3M46365686F47m                                                                                                                                                                                                                                                                                                                           CTC GGTTCCATGCAGGTGATGAACAAGACCCGGCGCATCATGGAGCAGGG
chr20 chr20 47538543 46365639 3M46365686F47m                                                                                                                                                                                                                                                                                                                           CTC GGTTCCATGCAGGTGATGAACAAGACCCGGCGCATCATGGAGCAGGG
chr20 chr20 46365688 46365638 50m                                                                                                                                                                                                                                                                                                                                        TGGGTTCCATGCAGGTGATGAACAAGACCCGGCGCATCATGGAGCAGGGC
chr20 chr20 46365685 46365635 50m                                                                                                                                                                                                                                                                                                                                           GTTCCATGCAGGTGATGAACAAGACCCGGCGCATCATGGAGCAGGGCGGG
chr20 chr20 46365682 46365632 50m                                                                                                                                                                                                                                                                                                                                              CCATGCAGGTGATGAACAAGACCCGGCGCATCATGGAGCAGGGCGGGACG
chr20 chr20 46365679 46365629 50m                                                                                                                                                                                                                                                                                                                                                 TGCAGGTGATGAACAAGACCCGGCGCATCATGGAGCAGGGCGGGACGCAC
chr20 chr20 46365674 46365624 50m                                                                                                                                                                                                                                                                                                                                                      GTGATGAACAAGACCCGGCGCATCATGGAGCAGGGCCGGACGCACTTCAT
chr20 chr20 46365671 46365621 50m                                                                                                                                                                                                                                                                                                                                                         ATGAACAAGACCCGGCGCATCATGGAGCAGGGCGGGACGCACTTCATCAA
chr20 chr20 46365668 46365618 50m                                                                                                                                                                                                                                                                                                                                                            AACAAGACCCGGCGCATCATGGAGCAGGGCGGGACGCACTTCATCAACGC
chr20 chr20 46365665 46365615 50m                                                                                                                                                                                                                                                                                                                                                               AAGACCCGGCGCATCATGGAGCAGGGCGGGACGCACTTCATCAACGCCTT
chr20 chr20 46365662 46365612 50m                                                                                                                                                                                                                                                                                                                                                                  ACCCGGCGCATCATGGAGCAGGGCGGGACGCACTTCATCAACGCCTTCGT
chr20 chr20 46365659 46365609 50m                                                                                                                                                                                                                                                                                                                                                                     CGGCGCATCATGGAGCAGGGCGGGACGCACTTCATCAACGCCTTCGTGAA
chr20 chr20 46365656 46365606 50m                                                                                                                                                                                                                                                                                                                                                                        TGCATCATGGAGCAGGGCGGGACGCACTTCATCAACGCCTTCGTGACCAC
chr20 chr20 46365653 46365603 50m                                                                                                                                                                                                                                                                                                                                                                           ATCATGGAGCAGGGCGGGACGCACTTCATCAACGCCTTCGTGACCACACC
chr20 chr20 46365650 46365600 50m                                                                                                                                                                                                                                                                                                                                                                              ATGGAGCAGGGCGGGACGCACTTCATCAACGCCTTCGTGACCACGCCCAT
chr20 chr20 46365647 46365597 50m                                                                                                                                                                                                                                                                                                                                                                                 GAGCAGGGCGGGACGCACTTCATCAACGCCTTCGTGACCAGACCCATGTG
chr20 chr20 46365644 46365594 50m                                                                                                                                                                                                                                                                                                                                                                                    CAGGGCGGGACGCACTTCATCAACGCCTTCGTGACCACACCCATGTGCTG
chr20 chr20 46365641 46365591 50m                                                                                                                                                                                                                                                                                                                                                                                       GGCGGGACGCACTTCATCAACGCCTTCGTGACCACACCCATGTGCTGCCC
chr20 chr20 46365638 46365588 50m                                                                                                                                                                                                                                                                                                                                                                                          GGGGCGCACTTCATCAACGCCTTCGTGACCACACCCATGTGCTGCCCCCC
chr20 chr20 46365635 46365585 50m                                                                                                                                                                                                                                                                                                                                                                                             ACGCACTTCATCAACGCCTTCGTGACCACACCCATGTGCTGCCCCTCACG
chr20 chr20 46365632 46365582 50m                                                                                                                                                                                                                                                                                                                                                                                                CACTTCATCAACGCCTTCGTGACCACACCCATGTGCTGCCCCTCACGCTC
chr20 chr20 46365628 46365578 50m                                                                                                                                                                                                                                                                                                                                                                                                    TCATCAACGCCTTCGTGACCACACCCATGTGCTGCCCCTCACGCTCCTCC
chr20 chr20 46365625 46365575 50m                                                                                                                                                                                                                                                                                                                                                                                                       TCAACGCCTTCGTGACCACACCCATGTGCTGCCCCTCACGCTCCTCCATC
chr20 chr20 46365621 46365571 50m                                                                                                                                                                                                                                                                                                                                                                                                           CGCCTTCGTGACCACACCCATGTGCTGCCCCTCACGCTCCTCCATCCTCA
chr20 chr20 46365618 46365568 50m                                                                                                                                                                                                                                                                                                                                                                                                              CTTCGTGACCACACCCATGTGCTGCCCCTCACGCTCCTCCATCCTCACCG
chr20 chr20 46365615 46365565 50m                                                                                                                                                                                                                                                                                                                                                                                                                 CGTGACCACACCCATGTGCTGCCCCTCACGCTCCTCCATCCTCACCGGCA
chr20 chr20 46365612 46365562 50m                                                                                                                                                                                                                                                                                                                                                                                                                    GACCACACCCATGTGCTGCCCCTCACGCTCCTCCATCCTCACCGGCAAGT
chr20 chr20 46365609 46365559 50m                                                                                                                                                                                                                                                                                                                                                                                                                       CACACCCATGTGCTGCCCCTCACGCTCCTCCATCCTCACCGGCAAGTACG
chr20 chr20 46365606 46365556 50m                                                                                                                                                                                                                                                                                                                                                                                                                          ACCCATGTGCTGCCCCTCACGCTCCTCCATCCTCACCGGCAAGTACGTCC
chr20 chr20 46365603 46365553 50m                                                                                                                                                                                                                                                                                                                                                                                                                             CATGTGCTGCCCCTCACGCTCCTCCATCCTCACCGGCAAGTACGTCCACA
chr20 chr20 46365600 46365550 50m                                                                                                                                                                                                                                                                                                                                                                                                                                GTGCTGCCCCTCACGCTCCTCCATCCTCACCGGCAAGTACGTCCACAACC
chr20 chr20 46365597 46365547 50m                                                                                                                                                                                                                                                                                                                                                                                                                                   CTGCCCCTCACGCTCCTCCATCCTCACCGGCAAGTACGTCCACAACCACA
chr20 chr20 46365593 46365543 50m                                                                                                                                                                                                                                                                                                                                                                                                                                       CCCTCCCGCTCCTCCATCCTCACCGGCAAGTACGTCCACAACCACAACAC
chr20 chr20 46365589 46365539 50m                                                                                                                                                                                                                                                                                                                                                                                                                                           CACGCTCCTCCATCCTCACCGGCAAGTACGTCCACAACCACAACACCTAC
chr20 chr20 46365582 46365532 50m                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTCCATCCTCACCGGCAAGTACGTCCACAACCACAACACCTACACCAACT
chr20 chr20 46365578 46365528 50m                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATCCTCACCGGCAAGTACGTCCACAACCACAACACCTACACCAACAATGA
chr20 chr20 46365575 46365525 50m                                                                                                                                                                                                                                                                                                                                                                                                                                                         CTCACCGGCAAGTACGTCCACAACCACAACACCTACACCAACAATGAGAA
chr20 chr20 46365571 46365521 50m                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCGGCAAGTACGTCCACAACCACAACACCTACACCAACAATGAGAACTGC
chr20 chr20 46365567 46365517 50m                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CAAGTACGTCCACAACCACAACACCTACACCAACCATGAGAACTGCTCCT
chr20 chr20 46365564 46365514 50m                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GTACGTCCACAACCACAACACCTACACCAACAATGAGAACTGCTCCTCGC
chr20 chr20 46365560 46365510 50m                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTCCACAACCACAACACCTACACCAACAATGAGAACTGCTCCTCGCCCTC
chr20 chr20 46365557 46365507 50m                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CACAACCACAACACCTACACCAACAATGAGAACTGCTCCTCGCCCTCCTG
chr20 chr20 46365554 46365504 50m                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AACCACAACACCTACACCAACAATGAGAACTGCTCCTCGCCCTCCTGGCA
chr20 chr20 46365551 46365501 50m                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CACAACACCTACGCCAACAATGAGAACTGCTCCTCGCCCTCCTGGCAGGC
chr20 chr20 46365548 46365498 50m                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AACACCTACACCAACAATGAGAACTGCTCCTCGCCCTCCTGGCAGGCACA
chr20 chr20 46365545 46365495 50m                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ACCTACACTAACAATGAGAACTGCTCCTCGCCCTCCTGGCAGGCACAGCA
chr20 chr20 46365542 46365492 50m                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TACACCAACAATGAGAACTGCTCCTCGCCCTCCTGGCAGGCACAGCACGA
chr20 chr20 46365539 46365489 50m                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ACCAACAATGAGAACTGCTCCTCGCCCTCCTGGCGGGCACAGCACGAGAG
chr20 chr20 46365536 46365486 50m                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AACAATGAGAACTGCTCCTCGCCCTCCTGGCAGGCACAGCACGAGAGCCG
chr20 chr20 46365533 46365483 50m                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AATGAGAACTGCTCCTCGCCCTCCTGGCAGGCACAGCACGAGAGCCGCAC
chr20 chr20 46365529 46365479 50m                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AGAACTGCTCCTCGCCCTCCTGGCAGGCACAGCACGAGAGCCGCACCTTT

11 pairs

12:-1
7:29
0:45
22:32
52:6
-4:67
-4:78
6:88
1:115
32:90
43:84

MCF7 chr20-chr20 46415145 52210297 rf

22 18 27 0 37 37
GAGGCTTTCGGCAAAGGCAGTCGAGTGTTTGCAGACCGGGGCGAGTCCTG CGGCTCCGGCTCCTCGGCCATTTCCTCGCGCGGCGGCGGCCGGGACTGAG
00000000000001112469999999999999999999999999999999 99999999999999999999999999999999887110000000000000
SULF2 exon21(46414790-46415359) ENSG00000171940 exon6(52210293-52210377)

blast search - human genome

left

>ref|NC_000020.10| Homo sapiens chromosome 20, GRCh37.p2 primary reference assembly
          Length = 63025520

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                  
Query: 1        gaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcctg 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46415195 gaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcctg 46415146


>ref|AC_000152.1| Homo sapiens chromosome 20, alternate assembly HuRef, whole genome shotgun
                sequence
          Length = 59656706

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                  
Query: 1        gaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcctg 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43156761 gaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcctg 43156712


>ref|AC_000063.1| Homo sapiens chromosome 20, alternate assembly Hs_Celera, whole genome
                shotgun sequence
          Length = 59605541

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                  
Query: 1        gaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcctg 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43128890 gaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcctg 43128841

right

>ref|NC_000020.10| Homo sapiens chromosome 20, GRCh37.p2 primary reference assembly
          Length = 63025520

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        cggctccggctcctcggccatttcctcgcgcggcggcggccgggactgag 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52210298 cggctccggctcctcggccatttcctcgcgcggcggcggccgggactgag 52210347


>ref|AC_000152.1| Homo sapiens chromosome 20, alternate assembly HuRef, whole genome shotgun
                sequence
          Length = 59656706

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        cggctccggctcctcggccatttcctcgcgcggcggcggccgggactgag 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48956544 cggctccggctcctcggccatttcctcgcgcggcggcggccgggactgag 48956593


>ref|AC_000063.1| Homo sapiens chromosome 20, alternate assembly Hs_Celera, whole genome
                shotgun sequence
          Length = 59605541

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        cggctccggctcctcggccatttcctcgcgcggcggcggccgggactgag 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48914945 cggctccggctcctcggccatttcctcgcgcggcggcggccgggactgag 48914994


>ref|NC_000022.10| Homo sapiens chromosome 22, GRCh37.p2 primary reference assembly
          Length = 51304566

 Score = 83.8 bits (42), Expect = 2e-14
 Identities = 48/50 (96%)
 Strand = Plus / Plus

                                                                  
Query: 1        cggctccggctcctcggccatttcctcgcgcggcggcggccgggactgag 50
                |||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 17091052 cggctccggcgcctcggccgtttcctcgcgcggcggcggccgggactgag 17091101


>ref|AC_000154.1| Homo sapiens chromosome 22, alternate assembly HuRef, whole genome
              shotgun sequence
          Length = 34107095

 Score = 83.8 bits (42), Expect = 2e-14
 Identities = 48/50 (96%)
 Strand = Plus / Plus

                                                                
Query: 1      cggctccggctcctcggccatttcctcgcgcggcggcggccgggactgag 50
              |||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 910510 cggctccggcgcctcggccgtttcctcgcgcggcggcggccgggactgag 910559


>ref|AC_000065.1| Homo sapiens chromosome 22, alternate assembly Hs_Celera, whole genome
              shotgun sequence
          Length = 35075081

 Score = 83.8 bits (42), Expect = 2e-14
 Identities = 48/50 (96%)
 Strand = Plus / Plus

                                                                
Query: 1      cggctccggctcctcggccatttcctcgcgcggcggcggccgggactgag 50
              |||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 713203 cggctccggcgcctcggccgtttcctcgcgcggcggcggccgggactgag 713252

blast search - nt

left

>ref|NM_001161841.1| Homo sapiens sulfatase 2 (SULF2), transcript variant 3, mRNA
          Length = 4248

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   gaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcctg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 gaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcctg 215


>ref|NM_198596.2| Homo sapiens sulfatase 2 (SULF2), transcript variant 2, mRNA
          Length = 4239

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   gaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcctg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 gaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcctg 215


>ref|XM_001148908.1| PREDICTED: Pan troglodytes similar to extracellular sulfatase
           SULF-2 (LOC744295), mRNA
          Length = 1753

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   gaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcctg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcctg 719


>gb|AY358461.1| Homo sapiens clone DNA48606 GPPS559 (UNQ559) mRNA, complete cds
          Length = 3906

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   gaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcctg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 gaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcctg 153


>emb|AL121777.39| Human DNA sequence from clone RP5-1057D4 on chromosome 20 Contains the
             SRMP1 gene for spermidine synthase pseudogene 1, the 5'
             end of the gene for a novel protein similar to
             glucosamine-6-sulfatases (SULF2) (sulfatase 2, H-SULF2,
             KIAA1247) and a CpG island, complete sequence
          Length = 131888

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                               
Query: 1     gaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcctg 50
             ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23004 gaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcctg 22955


>emb|CR749319.1| Homo sapiens mRNA; cDNA DKFZp313E091 (from clone DKFZp313E091)
          Length = 3945

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   gaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcctg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 gaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcctg 159


>gb|AY101176.1| Homo sapiens extracellular sulfatase SULF-2 mRNA, complete cds
          Length = 4279

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   gaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcctg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 gaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcctg 215


>ref|XM_002830395.1| PREDICTED: Pongo abelii extracellular sulfatase Sulf-2-like
          (LOC100435119), mRNA
          Length = 3969

 Score = 89.7 bits (45), Expect = 1e-15
 Identities = 48/49 (97%)
 Strand = Plus / Plus

                                                           
Query: 1  gaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcct 49
          ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 25 gaggctttcagcaaaggcagtcgagtgtttgcagaccggggcgagtcct 73


>ref|XM_001106412.2| PREDICTED: Macaca mulatta sulfatase 2 (SULF2), mRNA
          Length = 4648

 Score = 83.8 bits (42), Expect = 6e-14
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                         
Query: 1   gaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagt 46
           ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 429 gaggctttcagcaaaggcagtcgagtgtttgcagaccggggcgagt 474

right

>ref|XM_002830434.1| PREDICTED: Pongo abelii zinc finger protein 217-like
          (LOC100456343), mRNA
          Length = 3924

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                            
Query: 1  cggctccggctcctcggccatttcctcgcgcggcggcggccgggactgag 50
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 cggctccggctcctcggccatttcctcgcgcggcggcggccgggactgag 32


>emb|AL157838.24| Human DNA sequence from clone RP4-724E16 on chromosome 20q13.12-13.32
             Contains the ZNF217 gene for zinc finger protein 217, a
             novel gene and two CpG islands, complete sequence
          Length = 128871

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                               
Query: 1     cggctccggctcctcggccatttcctcgcgcggcggcggccgggactgag 50
             ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82195 cggctccggctcctcggccatttcctcgcgcggcggcggccgggactgag 82244


>gb|AF312915.1|AF312915 Homo sapiens chromosome 20 clones 97 and 127, complete sequence
          Length = 121143

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                
Query: 1      cggctccggctcctcggccatttcctcgcgcggcggcggccgggactgag 50
              ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115930 cggctccggctcctcggccatttcctcgcgcggcggcggccgggactgag 115979


>emb|CR974566.12| Pig DNA sequence from clone CH242-112C22 on chromosome 17, complete
             sequence
          Length = 164668

 Score = 89.7 bits (45), Expect = 1e-15
 Identities = 48/49 (97%)
 Strand = Plus / Plus

                                                              
Query: 1     cggctccggctcctcggccatttcctcgcgcggcggcggccgggactga 49
             ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 25632 cggctccggctcctcggccatttcctcgctcggcggcggccgggactga 25680


>dbj|AP000365.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone:KB7G2
          Length = 111123

 Score = 83.8 bits (42), Expect = 6e-14
 Identities = 48/50 (96%)
 Strand = Plus / Plus

                                                               
Query: 1     cggctccggctcctcggccatttcctcgcgcggcggcggccgggactgag 50
             |||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 32439 cggctccggcgcctcggccgtttcctcgcgcggcggcggccgggactgag 32488


>dbj|AP000547.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region,
              clone:KB67B5
          Length = 123288

 Score = 83.8 bits (42), Expect = 6e-14
 Identities = 48/50 (96%)
 Strand = Plus / Plus

                                                                
Query: 1      cggctccggctcctcggccatttcctcgcgcggcggcggccgggactgag 50
              |||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 122385 cggctccggcgcctcggccgtttcctcgcgcggcggcggccgggactgag 122434

reads

chr20 chr20 46415363 46415313 50m                                    TCCCGGGCCATTTCTGGACAACAGCTGCTATTTTCACTTGAGCCGAAGAG
chr20 chr20 46415360 46415310 50m                                       CGGGCCATTTCTGGACAACGGCTGCTATTTTCACTTGAGCCGAAGTTAAT
chr20 chr20 46415357 46415307 50m                                          GCCATTTCTGGACAACAGCTGCTATTTTCACTTGAGCCGAAGTTAATTTC
chr20 chr20 46415354 46415304 50m                                             ATTTCTGGACAACAGCTGCTATTTTCACTTGAGCCGAAGTTAATTTCTCG
chr20 chr20 46415351 46415301 50m                                                TCTGGACAACAGCTGCTATTTTCACTTGAGCCGAAGTTAATTTCTCGGGG
chr20 chr20 46415346 46415296 50m                                                     ACAACAGCTGCTATTTTCACTTGAGCCGAAGTTAATTTCTCGGGGAGTTC
chr20 chr20 46415343 46415293 50m                                                        ACAGCTGCTATTTTCACTTGAGCCGAAGTTAATTTCTCGGGGAGTTCTCG
chr20 chr20 46415340 46415290 50m                                                           GCTGCTATTTTCACTTGAGCCGAAGTTAATTTCTCGGGGAGTTCTCGGAC
chr20 chr20 46415337 46415287 50m                                                              GCTATTTTCACTTGAGCCGAAGTTAATTTCTCGGGGAGTTCTCGGGCGCG
chr20 chr20 46415334 46415284 50m                                                                 ATTTTCACTTGAGCCGAAGTTAATTTCTCGGGGAGTTCTCGGGCGCGCAC
chr20 chr20 46415327 46415277 50m                                                                        CTTGAGCCGAAGTTAATTTCTCGGGGAGTTCTCGGGCGCGCACAGGCAGC
chr20 chr20 46415324 46415274 50m                                                                           GAGCCGAAGTTAATTTCTCGGGGAGTTCTCGGGCGCGCACAGGCAGCTCG
chr20 chr20 46415321 46415271 50m                                                                              CCGAAGTTAATTTCTCGGGGAGTTCTCGGGCGCGCACAGGCAGCTCGGTT
chr20 chr20 46415318 46415268 50m                                                                                 AAGTTAATTTCTCGGGGAGTTCTCGGGCGCGCACAGGCAGCTCGGTTTGC
chr20 chr20 46415313 46415263 50m                                                                                      AATTTCTCGGGGAGTTCTCGGGCGCGCACAGACAGCTCGGTTTGCCCTGC
chr20 chr20 46415308 46415258 50m                                                                                           CTCGGGGAGTTCTCGGGCGCGCACAGGCAGCTCGGTTTGCCCTGCGATTG
chr20 chr20 46415305 46415255 50m                                                                                              GGGGAGTTCTCGGGCGCGCACAGGCAGCTCGGTTTGCCCTGCGATTGAGC
chr20 chr20 46415301 46415251 50m                                                                                                  AGTTCTCGGGCGCGCACAGGCAGCTCGGTTTGCCCTGCGATTGAGCTGCG
chr20 chr20 46415297 46415247 50m                                                                                                      CTCGGGCGCGCACAGGCAGCTCGGTTTGCCCTGCGATTGAGCTGCGGGTC
chr20 chr20 46415294 46415244 50m                                                                                                         GGGCGCGCACAGGCAGCTCGGTTTGCCCTGCGATTGAGCTGCGGGTCGCG
chr20 chr20 46415291 46415241 50m                                                                                                            CGCGCACAGGCAGCTCGGTTTGCCCTGCGATTGAGCTGCGGGTCGCGGCC
chr20 chr20 46415288 46415238 50m                                                                                                               GCACAGGCAGCTCGGTTTGCCCTGCGATTGAGCTGCGGGTCGCGGCCGGG
chr20 chr20 46415285 46415235 50m                                                                                                                  CAGGCAGCTCGGTTTGCCCTGCAATTGAGCTGCGGGTCGCGGCCGGCGCC
chr20 chr20 46415282 46415232 50m                                                                                                                     GCAGCTCGGTTTGCCCTGCGATTGAGCTGCGGGTCGCGGCCGGCGCCGGC
chr20 chr20 46415278 46415228 50m                                                                                                                         CTCGGTTTGCCCTGCGATTGAGCTGCGGGTCGCGGCCGGCGCCGGCCTCT
chr20 chr20 46415274 46415224 50m                                                                                                                             GTTTGCCCTGCGATTGAGCTGCGGGTCGCGGCCGGCGCCGGCCTCTCCTC
chr20 chr20 46415271 46415221 50m                                                                                                                                TGCCCTGCGATTGAGCTGCGGGTCGCGGCCGGCGCCGGCCTCTCCAATGG
chr20 chr20 46415268 46415218 50m                                                                                                                                   CCTGCGATTGAGCTGCGGGTCGCGGCCGGCGCCGGCCTCTCCAATGGCAA
chr20 chr20 46415264 46415214 50m                                                                                                                                       CGATTGAGCTGCGGGTCGCGGCCGGCGCCGGCCTCTCCAATGGCAAATGT
chr20 chr20 46415261 46415211 50m                                                                                                                                          TTGAGCTGCGGGTCGCGGCCGGCGCCGGCCTCTCCAATGGCAAATGTGTG
chr20 chr20 46415257 46415207 50m                                                                                                                                              GCTGCGGGTCGCGGCCGGCGCCGGCCTCTCCAATGGCAAATGTGTGTGGC
chr20 chr20 46415254 46415204 50m                                                                                                                                                 GCGGGTCGCGGCCGGCGCCGGCCTCTCCAATGGCAAATGTGTGTGGCTGG
chr20 chr20 46415251 46415201 50m                                                                                                                                                    GGTCGCGGCCGGCGCCGGCCTCTCCAATAGCAAATGTGTGTGGCTGGAGG
chr20 chr20 46415248 46415198 50m                                                                                                                                                       CGCGGCCGGCGCCGGCCTCTCCAATGGCAAATGTGTGTGGCTGGAGGCGA
chr20 chr20 46415245 46415195 50m                                                                                                                                                          GGCCGGCGCCGGCCTCTCCAATGGCAAATGTGTGTGGCTGGAGGCGAGCG
chr20 chr20 46415240 46415190 50m                                                                                                                                                               GCGCCGGCCTCTCCAATGGCAAATGTGTGTGGCTGGAGGCGAGCGCGAGG
chr20 chr20 46415237 46415187 50m                                                                                                                                                                  CCGGCCTCTCCAATGGCAAATGTGTGTGGCTGGAGGCGAGCGCGAGGCTT
chr20 chr20 46415234 46415184 50m                                                                                                                                                                     GCCTCTCCAATGGCAAATGTGTGTGGCTGGAGGCGAGCGCGAGGCTTTCG
chr20 chr20 46415230 46415180 50m                                                                                                                                                                         CTCCAATGGCAAATGTGTGTGGCTGGAGGCGAGCGCGAGGCTTTCGGCAA
chr20 chr20 46415226 46415176 50m                                                                                                                                                                             AATGGCAAATGTGTGTGGCTGGAGGCGAGCGCGAGGCTTTCGGCAAAGGC
chr20 chr20 46415223 46415173 50m                                                                                                                                                                                GGCAAATGTGTGTGGCTGGAGGCGAGCGCGGGGCTTTCGGCAAAGGCAGT
chr20 chr20 46415219 46415169 50m                                                                                                                                                                                    AATGTGTGTGGCTGGAGGCGAGCGCGAGGCTTTCGGCAAAGGCAGTCGAG
chr20 chr20 46415214 46415164 50m                                                                                                                                                                                         GTGTGGCTGGAGGCGAGCGCGAGGCTTTCGGCAAAGGCAGTCGAGTGTTT
chr20 chr20 46415211 46415161 50m                                                                                                                                                                                            TGGCTGGAGGCGAGCGCGAGGCTTTCGGCAAAGGCAGTCGAGTGTTTGCA
chr20 chr20 46415208 46415158 50m                                                                                                                                                                                               CTGGAGGCGAGCGCGAGGCTTTCGGCAAAGGCAGTCGAGTGTTTGCAGAC
chr20 chr20 46415205 46415155 50m                                                                                                                                                                                                  GAGGCGAGCGCGAGGCTTTCGGCAAAGGCAGTCGAGTGTTTGCAGACCGG
chr20 chr20 46415202 46415152 50m                                                                                                                                                                                                     GCGAGCGCGAGGCTTTCGGCAAAGGCAGTCGAGTGTTTGCAGACCGGGGC
chr20 chr20 46415199 46415149 50m                                                                                                                                                                                                        AGCGCGAGGCTTTCGGCAAAGGCAGTCGAGTGTTTGCAGACCGGGGCGAG
chr20 chr20 46415196 46415146 50m                                                                                                                                                                                                           GCGAGGCTTTCGGCAAAGGCAGTCGAGTGTTTGCAGACCGGGGCGAGTCC
chr20 chr20 46415193 46415143 50m                                                                                                                                                                                                              AGGCTTTCGGCAAAGGCAGTCGAGTGTTTGCAGACCGGGGCGAGTCCTCG
chr20 chr20 46415181 52210310 37m52210298F13M                                                                                                                                                                                                              AAGGCAGTCGAGTGTTTGCAGACCGGGGCGAGTCCTG CGGCTCCGGCTCC
chr20 chr20 46415178 52210313 34m52210298F16M                                                                                                                                                                                                                 GCAGTCGAGTGTTTGCAGACCGGGGCGAGTCCTG CGGCTCCGGCTCCTCG
chr20 chr20 46415177 52210314 33m52210298F17M                                                                                                                                                                                                                  CAGTCGAGTGTTTGCAGACCGGGGCGAGTCCTG CGGCTCCGGCTCCTCGG
chr20 chr20 46415177 52210314 33m52210298F17M                                                                                                                                                                                                                  CAGTCGAGTGTTTGCAGACCGGGGCGAGTCCTG CGGCTCCGGCTCCTCGG
chr20 chr20 46415176 52210315 32m52210298F18M                                                                                                                                                                                                                   AGTCGAGTGTTTGCAGACCGGGGCGAGTCCTG CGGCTCCGGCTCCTCGGC
chr20 chr20 46415176 52210315 32m52210298F18M                                                                                                                                                                                                                   AGTCGAGTGTTTGCAGACCGGGGCGAGTCCTG CGGCTCCGGCTCCTCGGC
chr20 chr20 46415175 52210316 31m52210298F19M                                                                                                                                                                                                                    GTCGAGTGTTTGCAGACCGGGGCGAGTCCTG CGGCTCCGGCTCCTCGGCC
chr20 chr20 46415175 52210316 31m52210298F19M                                                                                                                                                                                                                    GTCGAGTGTTTGCAGACCGGGGCGAGTCCTG CGGCTCCGGCTCCTCGGCC
chr20 chr20 46415175 52210316 31m52210298F19M                                                                                                                                                                                                                    GTCGAGTGTTTGCAGACCGGGGCGAGTCCTG CGGCTCCGGCTCCTCGGCC
chr20 chr20 46415175 52210316 31m52210298F19M                                                                                                                                                                                                                    GTCGAGTGTTTGCAGACCGGGGCGAGTCCTG CGGCTCCGGCTCCTCGGCC
chr20 chr20 46415167 52210324 23m52210298F27M                                                                                                                                                                                                                            TTTGCAGACCGGGGCGAGTCGTG CGGCTCCGGCTCCTCGGCCATTTCCAC
chr20 chr20 46415164 52210327 20m52210298F30M                                                                                                                                                                                                                               GCAGACCGGGGCGAGTCCTG CGGCTCCGGCTCCTCGGCCATTTCCTCGCG
chr20 chr20 46415162 52210329 18m52210298F32M                                                                                                                                                                                                                                 AGACCGGGGCGAGTCCTG CGGCTCCGGCTCCTCGGCCATTTCCTCGCGCG
chr20 chr20 46415162 52210329 18m52210298F32M                                                                                                                                                                                                                                 AGACCGGGGCGAGTCCTG CGGCTCCGGCTCCTCGGCCATTTCCTCGCGCG
chr20 chr20 46415160 52210331 16m52210298F34M                                                                                                                                                                                                                                   ACCGGGGCGAGTCCTG CGGCTCCGGCTCCTCGGCCATTTCCTCGCGCGGC
chr20 chr20 46415159 52210332 15m52210298F35M                                                                                                                                                                                                                                    CCGGGGCGAGTCCTG CGGCTCCGGCTCCTCGGCCATTTCCTCGCGCGGCG
chr20 chr20 46415159 52210332 15m52210298F35M                                                                                                                                                                                                                                    CCGGGGCGAGTCCTG CGGCTCCGGCTCCTCGGCCATTTCCTCGCGCGGCG
chr20 chr20 46415159 52210332 15m52210298F35M                                                                                                                                                                                                                                    CCGGGGCGAGTCCTG CGGCTCCGGCTCCTCGGCCATTTCCTCGCGCGGCG
chr20 chr20 46415159 52210332 15m52210298F35M                                                                                                                                                                                                                                    CCGGGGCGAGTCCTG CGGCTCCGGCTCCTCGGCCATTTCCTCGCGCGGCG
chr20 chr20 46415159 52210332 15m52210298F35M                                                                                                                                                                                                                                    CCGGGGCGAGTCCTG CGGCTCCGGCTCCTCGGCCATTTCCTCGCGCGGCT
chr20 chr20 46415159 52210332 15m52210298F35M                                                                                                                                                                                                                                    CCGGGGCGAGTCCTG CGGCTCCGGCTCCTCGGCCATTTCCTCGCGCGGCG
chr20 chr20 46415157 52210334 13m52210298F37M                                                                                                                                                                                                                                      GGGGCGAGTCCTG CGGCTCCGGCTCCTCGGCCATTTCCTCGCGCGGCGGC
chr20 chr20 46415156 52210335 12m52210298F38M                                                                                                                                                                                                                                       GGGCGAGTCCTG CGGCTCCGGCTCCTCGGCCATTTCCTCGCGCGGCGGCG
chr20 chr20 46415156 52210335 12m52210298F38M                                                                                                                                                                                                                                       GGGCGAGTCCTG CGGCTCCGGCTCCTCGGCCATTTCCTCGCGCGCAGGCG
chr20 chr20 46415156 52210335 12m52210298F38M                                                                                                                                                                                                                                       GGGCGAGTCCTG CGGCTCCGGCTCCTCGGCCATTTCCTCGCGCGGCGGCG
chr20 chr20 46415156 52210335 12m52210298F38M                                                                                                                                                                                                                                       GGGCTAGTCCTG CGGCTCCGGCTCCTCGGCCATTTCCTCGCGCGGCGGCG
chr20 chr20 46415154 52210337 10m52210298F40M                                                                                                                                                                                                                                         GCGAGTCCTG CGGCTCCGGCTCCTCGGCCATTTCCTCGCGCGGCGGCGGC
chr20 chr20 46415154 52210337 10m52210298F40M                                                                                                                                                                                                                                         GCGAGTCCTG CGGCTCCGGCTCCTCGGCCATTTCCTCGCGCGGCGGCGGC
chr20 chr20 46415152 52210339 8m52210298F42M                                                                                                                                                                                                                                            GAGTCCTG CGGCTCCGGCTCCTCGGCCATTTCCTCGCGCGGCGGCGGCCG
chr20 chr20 52210293 52210343 50M                                                                                                                                                                                                                                                            CCTGCGGCTCCGGCTCCTCGGCCATTTCCTCGCGCGGCGGCGGCCGGGAC
chr20 chr20 52210296 52210346 50M                                                                                                                                                                                                                                                               GCGGCTCCGGCTCCTCGGCCATTTCCTCGCGCGGCGGCGGCCGGGACTGA
chr20 chr20 52210299 52210349 50M                                                                                                                                                                                                                                                                  GCTCCAGCTCCTCGGCCATTTCCTCGCGCGGCGGCGGCCGGGACTGAGCT
chr20 chr20 52210302 52210352 50M                                                                                                                                                                                                                                                                     CCGGCTCCTCGGCCACTTCCTCGCGCGGCGGCGGCCGGGACTGAGCTGAC
chr20 chr20 52210307 52210357 50M                                                                                                                                                                                                                                                                          TCCTCGGCCATTTCCTCGCGCGGCGGCGGCCGGGACTGAGCTGATACCAC
chr20 chr20 52210310 52210360 50M                                                                                                                                                                                                                                                                             TCGGCCATTTCCTCGCGCGGCGGCNGCCGGGACTGAGCTGACACGACTCG
chr20 chr20 52210316 52210366 50M                                                                                                                                                                                                                                                                                   ATTTCCTCGCGCGGCGGCGGCCGGGACTGAGCTGACACCACTCGGGCCGG
chr20 chr20 52210343 52210393 50M                                                                                                                                                                                                                                                                                                              TGAGCTGACACCACTCGGGCCGGCCGGGTTTGAATGAGGAGGAGCGGGCG
chr20 chr20 52210353 52210403 50M                                                                                                                                                                                                                                                                                                                        CCACTCGGGCCGGCCGGGTTTGAATGAGGAGGAGCGGGCGCGGAGGGGAG
chr20 chr20 52210360 52210410 50M                                                                                                                                                                                                                                                                                                                               GGCCGGCCGGGTTTGAATGAGGAGGAGCGGGAGCGGAGGGGAGGGGGCGG
chr20 chr20 52210418 52210468 50M                                                                                                                                                                                                                                                                                                                                                                                         GAGGGAGGGAGGGAGGCGTCGCGGAGTTTCTCTCAGCCTTTTGTGCGGCA
chr20 chr20 52210464 52210514 50M                                                                                                                                                                                                                                                                                                                                                                                                                                       GGACACCTCCCGGATTCCGCGCCCGCACCCGGCCCCCCAAAAGACACGGG
chr20 chr20 52210562 52210612 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CGCGCCTCCAAGACCCCCCCCCAACAAAAAAGG

18 pairs

18:5
19:7
14:13
17:19
84:5
16:386
59:345
14:396
59:355
15:413
13:419
14:424
62:376
14:429
19:424
62:392
103:373
9:3876

MCF7 chr20-chr20 46415146 52210647 rf

11 18 14 0 34 36
CGAGGCTTTCGGCAAAGGCAGTCGAGTGTTTGCAGACCGGGGCGAGTCCT CGGGCGCGGGGCTAAGGTGAGCGGGGCGGGGGTGCGCACGGGGGCAAAGG
00000000000000001111333888888889999999999999999999 99999999999999999999888333333332221100000000000000
SULF2 exon21(46414790-46415359) ENSG00000171940 exon5(52210644-52210800)

blast search - human genome

left

>ref|NC_000020.10| Homo sapiens chromosome 20, GRCh37.p2 primary reference assembly
          Length = 63025520

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                  
Query: 1        cgaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcct 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46415196 cgaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcct 46415147


>ref|AC_000152.1| Homo sapiens chromosome 20, alternate assembly HuRef, whole genome shotgun
                sequence
          Length = 59656706

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                  
Query: 1        cgaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcct 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43156762 cgaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcct 43156713


>ref|AC_000063.1| Homo sapiens chromosome 20, alternate assembly Hs_Celera, whole genome
                shotgun sequence
          Length = 59605541

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                  
Query: 1        cgaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcct 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43128891 cgaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcct 43128842

right

>ref|NC_000020.10| Homo sapiens chromosome 20, GRCh37.p2 primary reference assembly
          Length = 63025520

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        cgggcgcggggctaaggtgagcggggcgggggtgcgcacgggggcaaagg 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52210648 cgggcgcggggctaaggtgagcggggcgggggtgcgcacgggggcaaagg 52210697


>ref|AC_000152.1| Homo sapiens chromosome 20, alternate assembly HuRef, whole genome shotgun
                sequence
          Length = 59656706

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        cgggcgcggggctaaggtgagcggggcgggggtgcgcacgggggcaaagg 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48956894 cgggcgcggggctaaggtgagcggggcgggggtgcgcacgggggcaaagg 48956943


>ref|AC_000063.1| Homo sapiens chromosome 20, alternate assembly Hs_Celera, whole genome
                shotgun sequence
          Length = 59605541

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        cgggcgcggggctaaggtgagcggggcgggggtgcgcacgggggcaaagg 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48915295 cgggcgcggggctaaggtgagcggggcgggggtgcgcacgggggcaaagg 48915344

blast search - nt

left

>ref|NM_001161841.1| Homo sapiens sulfatase 2 (SULF2), transcript variant 3, mRNA
          Length = 4248

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cgaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcct 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 cgaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcct 214


>ref|NM_198596.2| Homo sapiens sulfatase 2 (SULF2), transcript variant 2, mRNA
          Length = 4239

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cgaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcct 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 cgaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcct 214


>ref|XM_001148908.1| PREDICTED: Pan troglodytes similar to extracellular sulfatase
           SULF-2 (LOC744295), mRNA
          Length = 1753

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cgaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcct 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 cgaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcct 718


>gb|AY358461.1| Homo sapiens clone DNA48606 GPPS559 (UNQ559) mRNA, complete cds
          Length = 3906

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cgaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcct 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 cgaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcct 152


>emb|AL121777.39| Human DNA sequence from clone RP5-1057D4 on chromosome 20 Contains the
             SRMP1 gene for spermidine synthase pseudogene 1, the 5'
             end of the gene for a novel protein similar to
             glucosamine-6-sulfatases (SULF2) (sulfatase 2, H-SULF2,
             KIAA1247) and a CpG island, complete sequence
          Length = 131888

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                               
Query: 1     cgaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcct 50
             ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23005 cgaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcct 22956


>emb|CR749319.1| Homo sapiens mRNA; cDNA DKFZp313E091 (from clone DKFZp313E091)
          Length = 3945

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cgaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcct 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 cgaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcct 158


>gb|AY101176.1| Homo sapiens extracellular sulfatase SULF-2 mRNA, complete cds
          Length = 4279

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cgaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcct 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 cgaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcct 214


>ref|XM_002830395.1| PREDICTED: Pongo abelii extracellular sulfatase Sulf-2-like
          (LOC100435119), mRNA
          Length = 3969

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                            
Query: 1  cgaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagtcct 50
          |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 24 cgaggctttcagcaaaggcagtcgagtgtttgcagaccggggcgagtcct 73


>ref|XM_001106412.2| PREDICTED: Macaca mulatta sulfatase 2 (SULF2), mRNA
          Length = 4648

 Score = 85.7 bits (43), Expect = 2e-14
 Identities = 46/47 (97%)
 Strand = Plus / Plus

                                                          
Query: 1   cgaggctttcggcaaaggcagtcgagtgtttgcagaccggggcgagt 47
           |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 428 cgaggctttcagcaaaggcagtcgagtgtttgcagaccggggcgagt 474

right

>ref|XM_001092414.2| PREDICTED: Macaca mulatta zinc finger protein 217 (ZNF217), mRNA
          Length = 5873

 Score = 87.7 bits (44), Expect = 4e-15
 Identities = 44/44 (100%)
 Strand = Plus / Minus

                                                       
Query: 1   cgggcgcggggctaaggtgagcggggcgggggtgcgcacggggg 44
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 cgggcgcggggctaaggtgagcggggcgggggtgcgcacggggg 112

reads

chr20 chr20 46415363 46415313 50m                                    TCCCGGGCCATTTCTGGACAACAGCTGCTATTTTCACTTGAGCCGAAGAG
chr20 chr20 46415360 46415310 50m                                       CGGGCCATTTCTGGACAACGGCTGCTATTTTCACTTGAGCCGAAGTTAAT
chr20 chr20 46415357 46415307 50m                                          GCCATTTCTGGACAACAGCTGCTATTTTCACTTGAGCCGAAGTTAATTTC
chr20 chr20 46415354 46415304 50m                                             ATTTCTGGACAACAGCTGCTATTTTCACTTGAGCCGAAGTTAATTTCTCG
chr20 chr20 46415351 46415301 50m                                                TCTGGACAACAGCTGCTATTTTCACTTGAGCCGAAGTTAATTTCTCGGGG
chr20 chr20 46415346 46415296 50m                                                     ACAACAGCTGCTATTTTCACTTGAGCCGAAGTTAATTTCTCGGGGAGTTC
chr20 chr20 46415343 46415293 50m                                                        ACAGCTGCTATTTTCACTTGAGCCGAAGTTAATTTCTCGGGGAGTTCTCG
chr20 chr20 46415340 46415290 50m                                                           GCTGCTATTTTCACTTGAGCCGAAGTTAATTTCTCGGGGAGTTCTCGGAC
chr20 chr20 46415337 46415287 50m                                                              GCTATTTTCACTTGAGCCGAAGTTAATTTCTCGGGGAGTTCTCGGGCGCG
chr20 chr20 46415334 46415284 50m                                                                 ATTTTCACTTGAGCCGAAGTTAATTTCTCGGGGAGTTCTCGGGCGCGCAC
chr20 chr20 46415327 46415277 50m                                                                        CTTGAGCCGAAGTTAATTTCTCGGGGAGTTCTCGGGCGCGCACAGGCAGC
chr20 chr20 46415324 46415274 50m                                                                           GAGCCGAAGTTAATTTCTCGGGGAGTTCTCGGGCGCGCACAGGCAGCTCG
chr20 chr20 46415321 46415271 50m                                                                              CCGAAGTTAATTTCTCGGGGAGTTCTCGGGCGCGCACAGGCAGCTCGGTT
chr20 chr20 46415318 46415268 50m                                                                                 AAGTTAATTTCTCGGGGAGTTCTCGGGCGCGCACAGGCAGCTCGGTTTGC
chr20 chr20 46415313 46415263 50m                                                                                      AATTTCTCGGGGAGTTCTCGGGCGCGCACAGACAGCTCGGTTTGCCCTGC
chr20 chr20 46415308 46415258 50m                                                                                           CTCGGGGAGTTCTCGGGCGCGCACAGGCAGCTCGGTTTGCCCTGCGATTG
chr20 chr20 46415305 46415255 50m                                                                                              GGGGAGTTCTCGGGCGCGCACAGGCAGCTCGGTTTGCCCTGCGATTGAGC
chr20 chr20 46415301 46415251 50m                                                                                                  AGTTCTCGGGCGCGCACAGGCAGCTCGGTTTGCCCTGCGATTGAGCTGCG
chr20 chr20 46415297 46415247 50m                                                                                                      CTCGGGCGCGCACAGGCAGCTCGGTTTGCCCTGCGATTGAGCTGCGGGTC
chr20 chr20 46415294 46415244 50m                                                                                                         GGGCGCGCACAGGCAGCTCGGTTTGCCCTGCGATTGAGCTGCGGGTCGCG
chr20 chr20 46415291 46415241 50m                                                                                                            CGCGCACAGGCAGCTCGGTTTGCCCTGCGATTGAGCTGCGGGTCGCGGCC
chr20 chr20 46415288 46415238 50m                                                                                                               GCACAGGCAGCTCGGTTTGCCCTGCGATTGAGCTGCGGGTCGCGGCCGGG
chr20 chr20 46415285 46415235 50m                                                                                                                  CAGGCAGCTCGGTTTGCCCTGCAATTGAGCTGCGGGTCGCGGCCGGCGCC
chr20 chr20 46415282 46415232 50m                                                                                                                     GCAGCTCGGTTTGCCCTGCGATTGAGCTGCGGGTCGCGGCCGGCGCCGGC
chr20 chr20 46415278 46415228 50m                                                                                                                         CTCGGTTTGCCCTGCGATTGAGCTGCGGGTCGCGGCCGGCGCCGGCCTCT
chr20 chr20 46415274 46415224 50m                                                                                                                             GTTTGCCCTGCGATTGAGCTGCGGGTCGCGGCCGGCGCCGGCCTCTCCTC
chr20 chr20 46415271 46415221 50m                                                                                                                                TGCCCTGCGATTGAGCTGCGGGTCGCGGCCGGCGCCGGCCTCTCCAATGG
chr20 chr20 46415268 46415218 50m                                                                                                                                   CCTGCGATTGAGCTGCGGGTCGCGGCCGGCGCCGGCCTCTCCAATGGCAA
chr20 chr20 46415264 46415214 50m                                                                                                                                       CGATTGAGCTGCGGGTCGCGGCCGGCGCCGGCCTCTCCAATGGCAAATGT
chr20 chr20 46415261 46415211 50m                                                                                                                                          TTGAGCTGCGGGTCGCGGCCGGCGCCGGCCTCTCCAATGGCAAATGTGTG
chr20 chr20 46415257 46415207 50m                                                                                                                                              GCTGCGGGTCGCGGCCGGCGCCGGCCTCTCCAATGGCAAATGTGTGTGGC
chr20 chr20 46415254 46415204 50m                                                                                                                                                 GCGGGTCGCGGCCGGCGCCGGCCTCTCCAATGGCAAATGTGTGTGGCTGG
chr20 chr20 46415251 46415201 50m                                                                                                                                                    GGTCGCGGCCGGCGCCGGCCTCTCCAATAGCAAATGTGTGTGGCTGGAGG
chr20 chr20 46415248 46415198 50m                                                                                                                                                       CGCGGCCGGCGCCGGCCTCTCCAATGGCAAATGTGTGTGGCTGGAGGCGA
chr20 chr20 46415245 46415195 50m                                                                                                                                                          GGCCGGCGCCGGCCTCTCCAATGGCAAATGTGTGTGGCTGGAGGCGAGCG
chr20 chr20 46415240 46415190 50m                                                                                                                                                               GCGCCGGCCTCTCCAATGGCAAATGTGTGTGGCTGGAGGCGAGCGCGAGG
chr20 chr20 46415237 46415187 50m                                                                                                                                                                  CCGGCCTCTCCAATGGCAAATGTGTGTGGCTGGAGGCGAGCGCGAGGCTT
chr20 chr20 46415234 46415184 50m                                                                                                                                                                     GCCTCTCCAATGGCAAATGTGTGTGGCTGGAGGCGAGCGCGAGGCTTTCG
chr20 chr20 46415230 46415180 50m                                                                                                                                                                         CTCCAATGGCAAATGTGTGTGGCTGGAGGCGAGCGCGAGGCTTTCGGCAA
chr20 chr20 46415226 46415176 50m                                                                                                                                                                             AATGGCAAATGTGTGTGGCTGGAGGCGAGCGCGAGGCTTTCGGCAAAGGC
chr20 chr20 46415223 46415173 50m                                                                                                                                                                                GGCAAATGTGTGTGGCTGGAGGCGAGCGCGGGGCTTTCGGCAAAGGCAGT
chr20 chr20 46415219 46415169 50m                                                                                                                                                                                    AATGTGTGTGGCTGGAGGCGAGCGCGAGGCTTTCGGCAAAGGCAGTCGAG
chr20 chr20 46415214 46415164 50m                                                                                                                                                                                         GTGTGGCTGGAGGCGAGCGCGAGGCTTTCGGCAAAGGCAGTCGAGTGTTT
chr20 chr20 46415211 46415161 50m                                                                                                                                                                                            TGGCTGGAGGCGAGCGCGAGGCTTTCGGCAAAGGCAGTCGAGTGTTTGCA
chr20 chr20 46415208 46415158 50m                                                                                                                                                                                               CTGGAGGCGAGCGCGAGGCTTTCGGCAAAGGCAGTCGAGTGTTTGCAGAC
chr20 chr20 46415205 46415155 50m                                                                                                                                                                                                  GAGGCGAGCGCGAGGCTTTCGGCAAAGGCAGTCGAGTGTTTGCAGACCGG
chr20 chr20 46415202 46415152 50m                                                                                                                                                                                                     GCGAGCGCGAGGCTTTCGGCAAAGGCAGTCGAGTGTTTGCAGACCGGGGC
chr20 chr20 46415199 46415149 50m                                                                                                                                                                                                        AGCGCGAGGCTTTCGGCAAAGGCAGTCGAGTGTTTGCAGACCGGGGCGAG
chr20 chr20 46415196 46415146 50m                                                                                                                                                                                                           GCGAGGCTTTCGGCAAAGGCAGTCGAGTGTTTGCAGACCGGGGCGAGTCC
chr20 chr20 46415193 46415143 50m                                                                                                                                                                                                              AGGCTTTCGGCAAAGGCAGTCGAGTGTTTGCAGACCGGGGCGAGTCCTCG
chr20 chr20 46415187 52210655 42m52210648F8M                                                                                                                                                                                                         TCGGCAAAGGCAGTCGAGTGTTTGCAGACCGGGGCGAGTCCT CGGGCGCG
chr20 chr20 46415186 52210656 41m52210648F9M                                                                                                                                                                                                          CGGCAAAGGCAGTCGAGTGTTTGCAGACCGGGGCGAGTCCT CGGGCGCGG
chr20 chr20 46415186 52210656 41m52210648F9M                                                                                                                                                                                                          CGGCAAAGGCAGTCGAGTGTTTGCAGACCGGGGCGAGTCCT CGGGCGCGG
chr20 chr20 46415179 52210663 34m52210648F16M                                                                                                                                                                                                                GGCAGTCGAGTGTTTGCAGACCGGGGCGAGTCCT CGGGCGCGGGGCTAAG
chr20 chr20 46415175 52210667 30m52210648F20M                                                                                                                                                                                                                    GTCGGGTGTTTGCAGACCGGGGCGAGTCCT CGGGCGCGGGGCTAAGGTGA
chr20 chr20 46415175 52210667 30m52210648F20M                                                                                                                                                                                                                    GTCGAGTGTTTGCAGACCGGGGCGAGTCCT CGGGCGCGGGGCTAAGGTGA
chr20 chr20 46415172 52210670 27m52210648F23M                                                                                                                                                                                                                       GAGTGTTTGCAGACCGGGGCGAGTCCT CGGGCGCGGGGCTAAGGTGAGCG
chr20 chr20 46415172 52210670 27m52210648F23M                                                                                                                                                                                                                       GAGTGTTTGCAGACCGGGGCGAGTCCT CGGGCGCGGGGCTAAGGTGAGCG
chr20 chr20 46415172 52210670 27m52210648F23M                                                                                                                                                                                                                       GAGTGTTTGCAGACCGGGGCGAGTCCT CGGGCGCGGGGCTAAGGTGAGCG
chr20 chr20 46415172 52210670 27m52210648F23M                                                                                                                                                                                                                       GAGTGTTTGCAGACCGGGGCGAGTCCT CGGGCGCGGGGCTAAGGTGAGCG
chr20 chr20 46415172 52210670 27m52210648F23M                                                                                                                                                                                                                       GAGTGTTTGCAGACCGGGGCGAGTCCT CGGGCGCGGGGCTAAGGTGAGCG
chr20 chr20 46415164 52210678 19m52210648F31M                                                                                                                                                                                                                               GCAGACCGGGGCGAGTCCT CGGGCGCGGGGCTAAGGTGAGCGGGGCGGGG
chr20 chr20 46415161 52210681 16m52210648F34M                                                                                                                                                                                                                                  GACCGGGGCGAGTCCT CGGGCGCGGGGCTAAGGTGAGCGGGGCGGGGGTG
chr20 chr20 46415159 52210683 14m52210648F36M                                                                                                                                                                                                                                    CTGGGGCGAGTCCT CGGGCGCGGGGCTAAGGTGAGCGGGGCGGGGGTGCG
chr20 chr20 46415155 52210687 10m52210648F40M                                                                                                                                                                                                                                        GGCGAGTCCT CGGGCGCGGGGCTAAGGTGAGCGGGGCGGGGGTGCGCACG
chr20 chr20 46415155 52210687 10m52210648F40M                                                                                                                                                                                                                                        GGCGAGTCCT CGGGCGCGGGGCTAAGGTGAGCGGGGCGGGGGTGCGCACG
chr20 chr20 46415154 52210688 9m52210648F41M                                                                                                                                                                                                                                          GCGAGTCCT CGGGCGCGGGGCTAAGGTGAGCGGGGCGGGGGTGCGCACGG
chr20 chr20 46415153 52210689 8m52210648F42M                                                                                                                                                                                                                                           CGAGTCCT CGGGCGCGGGGCTAAGGTGAGCGGGGCGGGGGTGCGCACGGG
chr20 chr20 52210642 52210692 50M                                                                                                                                                                                                                                                          GTCCTCGGGCGCGGGGCTAAGGTGAGCGGGGCGGGGGTGCGCACGGGGGC
chr20 chr20 52210647 52210697 50M                                                                                                                                                                                                                                                               CGGGCGCGGGGCTAAGGTGAGCGGGGCGGGGGTGCGCACGGGGGCAAAGG
chr20 chr20 52210651 52210701 50M                                                                                                                                                                                                                                                                   CGCGGGGCTAAGGTGAGCGGGGCGGGGGTGCGCACGGGGGCAAAGGCGCG
chr20 chr20 52210655 52210705 50M                                                                                                                                                                                                                                                                       GGGCTAAGGTGAGCGGGGCGGGGGTGTGCACGGGGGCAAAGGCGCGGGCG
chr20 chr20 52210668 52210718 50M                                                                                                                                                                                                                                                                                    CGGGCCGGTGGTGCGCACGGGGGCAAAGGCGCGGGCGCCCCCTACTCGTC
chr20 chr20 52210671 52210721 50M                                                                                                                                                                                                                                                                                       GGCGGGGGTGCGCACGGGGGCAAAGGCGCGGGCGCCCCCTACTCGTCCGC
chr20 chr20 52210674 52210724 50M                                                                                                                                                                                                                                                                                          GGGGGTGCGCACGGGGGCAAAGGCGCGGGCGCCCCCTACTCGTCCGCGCG
chr20 chr20 52210678 52210728 50M                                                                                                                                                                                                                                                                                              GTGCGCACGGGGGCAAAGGCGCGGGCGCCCCCTACTCGTCCGCGCGGGGA
chr20 chr20 52210681 52210731 50M                                                                                                                                                                                                                                                                                                 CGCATGGGGGCAAAGGCGCGGGCGCCCCCTACTCGTCCGCGCGGGGACAG
chr20 chr20 52210684 52210734 50M                                                                                                                                                                                                                                                                                                    ACGGGGGCAAAGGCGCGGGCGCCCCCTACTCGTCCGCGCGGGGACAGTGC
chr20 chr20 52210688 52210738 50M                                                                                                                                                                                                                                                                                                        GGGCAAAGGCGCGGGCGCCCCCTACTCGTCCGCGCGGGGACAGTGCAGGC
chr20 chr20 52210691 52210741 50M                                                                                                                                                                                                                                                                                                           CAAAGGCGCGGGCGCCCCCTACTCGTCCGCGCGGGGACACTGCAGGCGCG
chr20 chr20 52210695 52210745 50M                                                                                                                                                                                                                                                                                                               GGCGCGGGCGCCCCCTACTCGTCCGCGCGGGGACAGTGCAGGCGCGGGGG
chr20 chr20 52210700 52210750 50M                                                                                                                                                                                                                                                                                                                    GGGCGCCCCCTACTCGTCCGCGCGGGGACAGTGCAGGCGCGGGGGGTCCC
chr20 chr20 52210704 52210754 50M                                                                                                                                                                                                                                                                                                                        GCCCCCTACTCGTCCGCGCGGGGACAGTGCAGGCGCGGGCGGTCCCTAGC
chr20 chr20 52210710 52210760 50M                                                                                                                                                                                                                                                                                                                              TACTCGTCCGCGCGGGGACAGTGCAGGCGCGGGGGGTCCCTAGAGCCGCC
chr20 chr20 52210713 52210763 50M                                                                                                                                                                                                                                                                                                                                 TCGTCCGCGCGGGGACAGTGCAGGCGCGGGGGGTCCCTAGAGCCGCCGGG
chr20 chr20 52210716 52210766 50M                                                                                                                                                                                                                                                                                                                                    TCCGCGCGGGGACAGTGCAGGCGCGGGGGGTCCCTAGAGCCGCCGGGGCG
chr20 chr20 52210721 52210771 50M                                                                                                                                                                                                                                                                                                                                         GCGGGGACAGTGCAGGCGCGGGGGGTCCCTAGAGCCGCCGGGGCGCGGCG
chr20 chr20 52210724 52210774 50M                                                                                                                                                                                                                                                                                                                                            GGGACAGTGCAGGCGCGGGGGGTCCCTAGAGCCGCCGGGGCGCGGCGCGT
chr20 chr20 52210727 52210777 50M                                                                                                                                                                                                                                                                                                                                               ACAGTGCAGGCGCGGGGGGTCCCTAGAGCCGCCGGGGCGCGGCGCGTCCG
chr20 chr20 52210734 52210784 50M                                                                                                                                                                                                                                                                                                                                                      AGGCGCGGGGGGTCCCTAGAGCCGCCGGGGCGCGGCGCGTCCGGCGCTGG
chr20 chr20 52210741 52210791 50M                                                                                                                                                                                                                                                                                                                                                             GGGGGTCCCTAGAGCCGCCGGGGCGCGGCGCGTCCGGCGCTGGGGGACTG
chr20 chr20 52210744 52210794 50M                                                                                                                                                                                                                                                                                                                                                                GGTCCCTAGAGCCGCCGGGGCGCGGCGCGTCCGGCGCTGGGGGACTGTTG
chr20 chr20 52210754 52210804 50M                                                                                                                                                                                                                                                                                                                                                                          GCCGCCGGGGCGCGGCGCGTCCGGCGCTGGGGGACTGTTGGGTCAGAAAG
chr20 chr20 52210768 52210818 50M                                                                                                                                                                                                                                                                                                                                                                                        GCGCGTCCGGCGCTGGGGGACTGTTGGGTCAGAAAGTGTTCAGGGAGCAG
chr20 chr20 52210771 52210821 50M                                                                                                                                                                                                                                                                                                                                                                                           CGTCCGGCGCTGGGGGACTGTTGGGTCAGAAAGTGTTCAGGGAGCAGCTG
chr20 chr20 52210780 52210830 50M                                                                                                                                                                                                                                                                                                                                                                                                    CTGGGGGACTGTTGGGTCAGAAAGTGTTCAGGGAGCAGCTGTTGCGCCCT
chr20 chr20 52210783 52210833 50M                                                                                                                                                                                                                                                                                                                                                                                                       GGGGACTGTTGGGTCAGAAAGTGTTCAGGGAGCAGCTGTTGCGCCCTCCC
chr20 chr20 52210796 52210846 50M                                                                                                                                                                                                                                                                                                                                                                                                                    TCAGAAAGTGTTCAGGGAGCAGCTGTTGCGCCCTCCCTCGGCCCCGCCGC
chr20 chr20 52210810 52210860 50M                                                                                                                                                                                                                                                                                                                                                                                                                                  GGGAGCAGCTGTTGCGCCCTCCCTCGGCCCCGCCGCTCGGAGACGCCCCG
chr20 chr20 52210818 52210868 50M                                                                                                                                                                                                                                                                                                                                                                                                                                          CTGTTGCGCCCTCCCTCGGCCCCGCCGCTCGGAGACGCCCCGCCCCCCCC

18 pairs

15:36
13:46
58:5
58:-5
14:63
12:69
13:74
61:26
13:79
18:74
61:42
102:23
16:-331
13:-337
18:-343
17:-345
83:-345
8:3526

MCF7 chr20-chr17 49411707 59430946 ff

9 3 9 0 35 33
CAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGAGCCTGGGGCCG AGGGGTGTTGTGAGGATTCATGGAGCAAATGGCTGTGAAAGCACCTTGTA
00000000000000011111111124888888899999999999999999 99999999999999988888888875111111100000000000000000
BCAS4 exon1(49411465-49411709) BCAS3 intron23(59161925-59445685)

blast search - human genome

left

>ref|NC_000020.10| Homo sapiens chromosome 20, GRCh37.p2 primary reference assembly
          Length = 63025520

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49411659 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 49411708


>ref|AC_000152.1| Homo sapiens chromosome 20, alternate assembly HuRef, whole genome shotgun
                sequence
          Length = 59656706

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46160015 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 46160064


>ref|AC_000063.1| Homo sapiens chromosome 20, alternate assembly Hs_Celera, whole genome
                shotgun sequence
          Length = 59605541

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46115926 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 46115975

right

>ref|NC_000017.10| Homo sapiens chromosome 17, GRCh37.p2 primary reference assembly
          Length = 81195210

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        aggggtgttgtgaggattcatggagcaaatggctgtgaaagcaccttgta 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59430947 aggggtgttgtgaggattcatggagcaaatggctgtgaaagcaccttgta 59430996


>ref|AC_000149.1| Homo sapiens chromosome 17, alternate assembly HuRef, whole genome shotgun
                sequence
          Length = 76567021

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        aggggtgttgtgaggattcatggagcaaatggctgtgaaagcaccttgta 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54800588 aggggtgttgtgaggattcatggagcaaatggctgtgaaagcaccttgta 54800637


>ref|AC_000060.1| Homo sapiens chromosome 17, alternate assembly Hs_Celera, whole genome
                shotgun sequence
          Length = 77819263

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        aggggtgttgtgaggattcatggagcaaatggctgtgaaagcaccttgta 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58531995 aggggtgttgtgaggattcatggagcaaatggctgtgaaagcaccttgta 58532044

blast search - nt

left

>ref|XM_001168029.1| PREDICTED: Pan troglodytes breast carcinoma amplified sequence 4,
           transcript variant 1 (BCAS4), mRNA
          Length = 1697

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 242


>ref|XM_001168054.1| PREDICTED: Pan troglodytes breast carcinoma amplified sequence 4,
           transcript variant 2 (BCAS4), mRNA
          Length = 1965

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 278


>ref|XM_514721.2| PREDICTED: Pan troglodytes breast carcinoma amplified sequence 4,
           transcript variant 3 (BCAS4), mRNA
          Length = 1832

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 242


>gb|BC047337.1| Homo sapiens breast carcinoma amplified sequence 4, mRNA (cDNA
           clone IMAGE:5500336), partial cds
          Length = 1256

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 107


>gb|BC056883.1| Homo sapiens breast carcinoma amplified sequence 4, mRNA (cDNA
           clone IMAGE:5764497), partial cds
          Length = 1524

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 101


>gb|AF361220.1| Homo sapiens breast carcinoma amplified sequence 4 (BCAS4) mRNA,
           complete cds
          Length = 968

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 278


>ref|NM_198799.2| Homo sapiens breast carcinoma amplified sequence 4 (BCAS4),
           transcript variant 2, mRNA
          Length = 1271

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 242


>ref|NM_017843.3| Homo sapiens breast carcinoma amplified sequence 4 (BCAS4),
           transcript variant 1, mRNA
          Length = 1368

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 242


>ref|NM_001010974.1| Homo sapiens breast carcinoma amplified sequence 4 (BCAS4),
           transcript variant 3, mRNA
          Length = 1136

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 242


>emb|AL031680.20| Human DNA sequence from clone RP5-850H21 on chromosome 20q13.11-13.2
             Contains the the PARD6B gene for par-6 partitioning
             defective 6 homolog beta (C. elegans), the BCAS4 gene for
             breast carcinoma amplified sequence 4 and two CpG islands,
             complete sequence
          Length = 117431

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                               
Query: 1     cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
             ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77084 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 77133


>dbj|AK000502.1| Homo sapiens cDNA FLJ20495 fis, clone KAT08572
          Length = 831

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 141


>emb|AJ511266.1| Homo sapiens partial mRNA for breast carcinoma amplified sequence 4
           protein (BCAS4 gene), isoform 1
          Length = 365

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 102


>gb|BC038381.1| Homo sapiens breast carcinoma amplified sequence 4, mRNA (cDNA
           clone MGC:21149 IMAGE:4472674), complete cds
          Length = 1180

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 128


>gb|AF361221.1| Homo sapiens breast carcinoma amplified sequence 4/3 fusion protein
           (BCAS4/BCAS3 fusion) mRNA, complete cds
          Length = 1321

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 229 cagcggggcgcgcgagctcgcgctcttcctgacccccgatcctggggccg 278


>ref|XM_002722695.1| PREDICTED: Oryctolagus cuniculus breast carcinoma amplified
           sequence 4 (LOC100354578), mRNA
          Length = 594

 Score = 87.7 bits (44), Expect = 4e-15
 Identities = 47/48 (97%)
 Strand = Plus / Plus

                                                           
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggc 48
           |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 129 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcccggggc 176


>ref|XR_011531.2| PREDICTED: Macaca mulatta breast carcinoma-amplified sequence
           4-like (LOC706118), miscRNA
          Length = 624

 Score = 83.8 bits (42), Expect = 6e-14
 Identities = 48/50 (96%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           |||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 141 cagcggagcgcgggagctcgcgctcttcctgacccccgagcctggggccg 190


>ref|XM_001095529.2| PREDICTED: Macaca mulatta breast carcinoma amplified sequence 4,
           transcript variant 2 (BCAS4), mRNA
          Length = 734

 Score = 83.8 bits (42), Expect = 6e-14
 Identities = 48/50 (96%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           |||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 187 cagcggagcgcgggagctcgcgctcttcctgacccccgagcctggggccg 236


>ref|XM_002747669.1| PREDICTED: Callithrix jacchus breast carcinoma-amplified sequence
           4-like (LOC100388541), mRNA
          Length = 612

 Score = 83.8 bits (42), Expect = 6e-14
 Identities = 48/50 (96%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           |||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 129 cagcggagcgcgcgagctcgccctcttcctgacccccgagcctggggccg 178


>ref|XM_849115.1| PREDICTED: Canis familiaris similar to breast carcinoma amplified
           sequence 4 isoform b (LOC611448), mRNA
          Length = 930

 Score = 79.8 bits (40), Expect = 1e-12
 Identities = 46/48 (95%)
 Strand = Plus / Plus

                                                           
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggc 48
           |||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 261 cagcggggcgcgcgagctcgcgctcttcctgaccccggagcccggggc 308

right

reads

chr20 chr20 49411498 49411548 50M                            CTGCCCCGCCTCCGCCAGGCGGTCCGCGGGGCATGCAGCGGACCGGGGGC
chr20 chr20 49411512 49411562 50M                                          CCAGGCGGTCCGCGGGGCATGCAGCCGACCGGGGGGGGGGCTCCGAGGCC
chr20 chr20 49411532 49411582 50M                                                              GCAGCGGACCGGGGGCGGGGCTCCGAGGCCCGGGCGCAACCACGGGCTCC
chr20 chr20 49411535 49411585 50M                                                                 GCGGACCGGGGGCGGGGCTCCGAGGCCCGGGCGCAACCACGGGCTCCCAG
chr20 chr20 49411542 49411592 50M                                                                        GGGGGCGGGGCTCCGAGGCCCGGGCGCAACCACGGGCTCCCAGGCAGCCT
chr20 chr20 49411548 49411598 50M                                                                              GGGGCTCCGAGGCCCGGGCGCAACCACGGGCTCCCAGGCAGCCTCCGCCA
chr20 chr20 49411554 49411604 50M                                                                                    CCGAGGCCCGGGCGCAACCACGGGCTCCCAGGCAGCCTCCGCCAGCCGGA
chr20 chr20 49411560 49411610 50M                                                                                          CCCGGGCGCAACCACGGGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCGT
chr20 chr20 49411564 49411614 50M                                                                                              GGCGCAACCACGGGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCC
chr20 chr20 49411567 49411617 50M                                                                                                 GCAACCACGGGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTC
chr20 chr20 49411570 49411620 50M                                                                                                    ACCATGGGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTCCTG
chr20 chr20 49411573 49411623 50M                                                                                                       ACGGGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTCCTGATG
chr20 chr20 49411576 49411626 50M                                                                                                          GGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTCCTGATGCTG
chr20 chr20 49411580 49411630 50M                                                                                                              GCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTCCTGATGCTGCTCG
chr20 chr20 49411583 49411633 50M                                                                                                                 AGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTCCTGATGCTGCTCATGG
chr20 chr20 49411587 49411637 50M                                                                                                                     AGCCTCCGCCAGCCGGACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGC
chr20 chr20 49411590 49411640 50M                                                                                                                        CTCCGCCAGCCGGACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGA
chr20 chr20 49411593 49411643 50M                                                                                                                           CGCCAGCCGGACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCA
chr20 chr20 49411596 49411646 50M                                                                                                                              CAGCCGGACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCC
chr20 chr20 49411599 49411649 50M                                                                                                                                 CCGGACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGG
chr20 chr20 49411602 49411652 50M                                                                                                                                    GACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCC
chr20 chr20 49411605 49411655 50M                                                                                                                                       CCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCGA
chr20 chr20 49411608 49411658 50M                                                                                                                                          GTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCG
chr20 chr20 49411611 49411661 50M                                                                                                                                             GCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAG
chr20 chr20 49411614 49411664 50M                                                                                                                                                CTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGG
chr20 chr20 49411617 49411667 50M                                                                                                                                                   CTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGC
chr20 chr20 49411620 49411670 50M                                                                                                                                                      ATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCG
chr20 chr20 49411623 49411673 50M                                                                                                                                                         CTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGA
chr20 chr20 49411626 49411676 50M                                                                                                                                                            CTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCT
chr20 chr20 49411629 49411679 50M                                                                                                                                                               GTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGC
chr20 chr20 49411632 49411682 50M                                                                                                                                                                  GACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCT
chr20 chr20 49411635 49411685 50M                                                                                                                                                                     GCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTT
chr20 chr20 49411638 49411688 50M                                                                                                                                                                        GATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCT
chr20 chr20 49411641 49411691 50M                                                                                                                                                                           CAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGAC
chr20 chr20 49411644 49411694 50M                                                                                                                                                                              CCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCC
chr20 chr20 49411647 49411697 50M                                                                                                                                                                                 GAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGG
chr20 chr20 49411650 49411700 50M                                                                                                                                                                                    CCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGATCC
chr20 chr20 49411653 49411703 50M                                                                                                                                                                                       ATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGG
chr20 chr20 49411656 49411706 50M                                                                                                                                                                                          CGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGC
chr20 chr20 49411659 49411709 50M                                                                                                                                                                                             AGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCGA
chr20 chr20 49411663 49411713 50M                                                                                                                                                                                                 GGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCGAGGTA
chr20 chr17 49411673 59430961 35M59430947F15M                                                                                                                                                                                               GCTCGCGCTCTTCCGGACCCCCGATCCTGGGGCCG AGGGGTGTTGTGAGG
chr20 chr17 49411682 59430970 26M59430947F24M                                                                                                                                                                                                        CTTCCTGACCCCCGATCCTGGGGCCG AGGGGTGTTGTGAGGATTCATGGA
chr20 chr17 49411683 59430971 25M59430947F25M                                                                                                                                                                                                         TTCCTGACCCCCGATCCTGGGGCCG AGGGGTGTTGTGAGGATTCATGGAG
chr20 chr17 49411683 59430971 25M59430947F25M                                                                                                                                                                                                         TTCCTGACCCCCGATCCTGGGGCCG AGGGGTGTTGTGAGGATTCATGGAG
chr20 chr17 49411684 59430972 24M59430947F26M                                                                                                                                                                                                          TCCTGACCCCCGATCCTGGGGCCG AGGGGTGTTGTGAGGATTCATGGAGC
chr20 chr17 49411684 59430972 24M59430947F26M                                                                                                                                                                                                          TCCTGACCCCCGATCCTGGGGCCG AGGGGTGTTGTGAGGATTCATGGAGC
chr20 chr17 49411684 59430972 24M59430947F26M                                                                                                                                                                                                          TCCTGACCCCCGATCCGGGGGCCG AGGGGTGTTGTGAGGATTCATGGAGC
chr20 chr17 49411684 59430972 24M59430947F26M                                                                                                                                                                                                          TCCTGACCCCCGATCCTGGGGCCG AGGGGTGTTGTGAGGATTCATGGAGC
chr20 chr17 49411691 59430979 17M59430947F33M                                                                                                                                                                                                                 CCCCGATCCTGGGGCCG AGGGGTGTTGTGAGGATTCATGGAGCAAATGGC
chr17 chr17 59430945 59430995 50M                                                                                                                                                                                                                                              CGGGGGTGTTGTGAGGATTCATGGAGCAAATGGCTGTGAAAGCACCTTGT
chr17 chr17 59430955 59431005 50M                                                                                                                                                                                                                                                        GTGAGGATTCATGGAGCAAATGGCTGTGAAAGCACCTTGTAAAGGGTAGA
chr17 chr17 59430973 59431023 50M                                                                                                                                                                                                                                                                          AATGGCTGTGAAAGCACCTTGTAAAGGGTAGAGCAGTGTGCGGCGTGAGG
chr17 chr17 59430986 59431036 50M                                                                                                                                                                                                                                                                                       GCACCTTGTAAAGGGTAGAGCAGTGTGCGGCGTGAGGGATTATTATCATT
chr17 chr17 59431005 59431055 50M                                                                                                                                                                                                                                                                                                          GCAGTGTGCGGCGTGAGGGATTATTATCATTGTTAAGACGTCTACGCCTC
chr17 chr17 59431011 59431061 50M                                                                                                                                                                                                                                                                                                                GGCGGCGTGAGGGATTATTATCATTGTTAAGACGTCTACGCCTCGTTGCT
chr17 chr17 59431022 59431072 50M                                                                                                                                                                                                                                                                                                                           GGATTATTATCATTGTTAAGACGTCTACGCCTCGTTGCTCACCCTGTGTG
chr17 chr17 59431028 59431078 50M                                                                                                                                                                                                                                                                                                                                 TTATCATTGTTAAGACGTCTACGCCTCGTTGCTCACCCTGTGTGATCCTG
chr17 chr17 59431045 59431095 50M                                                                                                                                                                                                                                                                                                                                                  TCTACGCCTCGTTGCTCACCCTGTGTGATCCTGCAGCTTCTCAACTTTTC
chr17 chr17 59431049 59431099 50M                                                                                                                                                                                                                                                                                                                                                      CGCCTCGTTGCTCACCCTGTGTGATCCTGCAGCTTCTCAACTTTTCCCTC
chr17 chr17 59431056 59431106 50M                                                                                                                                                                                                                                                                                                                                                             TTGCTCACCCTGTGTGATCCTGCAGCTTCTCAACTTTTCCCTCCTTTCCC
chr17 chr17 59431059 59431109 50M                                                                                                                                                                                                                                                                                                                                                                CTCACCCTGTGTGATCCTGCAGCTTCTCAACTTTTCCCTCCTTTCTCCCG
chr17 chr17 59431073 59431123 50M                                                                                                                                                                                                                                                                                                                                                                              TCCTGCAGCTTCTCAACTTTTCCCTCCTTTCTCCCTGGTTTCCACGCCCG
chr17 chr17 59431077 59431127 50M                                                                                                                                                                                                                                                                                                                                                                                  GCAGCTTCTCAACTTTTCCCTCCTTTCTCCCTGGTTTCCACGCCTGGGCT
chr17 chr17 59431086 59431136 50M                                                                                                                                                                                                                                                                                                                                                                                           CAACTTTTCCCTCCTTTCTCCCTGGTTTCCACGCCTGGGCTGCTGAGTCA
chr17 chr17 59431089 59431139 50M                                                                                                                                                                                                                                                                                                                                                                                              CTTTTCCCTCCTTTCTCCCTGGTTTCCACGCCTGGGCTGCTGAGTCAGGC
chr17 chr17 59431106 59431156 50M                                                                                                                                                                                                                                                                                                                                                                                                               CCTGGTTTCCACGCCTGGGCTGCTGAGTCAGGCGGACCGGCCAAGGCTGG
chr17 chr17 59431115 59431165 50M                                                                                                                                                                                                                                                                                                                                                                                                                        CACGCCTGGGCTGCTGAGTCAGGCGGACCGGCCAAGGCTGGCGAGGGCTG
chr17 chr17 59431124 59431174 50M                                                                                                                                                                                                                                                                                                                                                                                                                                 GCTGCTGAGTCAGGCGGACCGGCCAAGGCTGGCGAGGGCTGAACAGATGC
chr17 chr17 59431136 59431186 50M                                                                                                                                                                                                                                                                                                                                                                                                                                             GGCGGACCGGCCAAGGCTGGCGAGGGCTGAACAGATGCTCTGACATGTCA
chr17 chr17 59431143 59431193 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                    CGGCCAAGGCTGGCGAGGGCTGAACAGATGCTCTGACATGTCAAGGGAGG
chr17 chr17 59431148 59431198 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                         AAGGCTGGCGAGGGCTGAACAGATGCTCTGACATGTCAAGGGAGGAAATG
chr17 chr17 59431152 59431202 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTGGCGAGGGCTGAACAGATGCTCTGACATGTCAAGGGAGGAAATGACAG
chr17 chr17 59431156 59431206 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGAGGGCTGAACAGATGCTCTGACATGTCAAGGGAGGAAATGACAGTTCC
chr17 chr17 59431159 59431209 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GGGCTGAACAGATGCTCTGACATGTCAAGGGAGGAAATGACAGTTCCCAG
chr17 chr17 59431162 59431212 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CTGAACAGATGCTCTGACATGTCAAGGGAGGAAATGACAGTTCCCAGGCA
chr17 chr17 59431177 59431227 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GACATGTCAAGGGAGGAAATGACAGTTCCCAGGCAGCCCTCTGTTTCAGG
chr17 chr17 59431182 59431232 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GTCAAGGGAGGAAATGACAGTTCCCAGGCAGCCCTCTGTTTCAGGTGTCG
chr17 chr17 59431187 59431237 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GGGAGGAAATGACAGTTCCCAGGCAGCCCTCTGTTTCAGGTGTGGAACAG
chr17 chr17 59431193 59431243 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AAATGACAGTTCCCAGGCAGCCCTCTGTTTCAGGTGTGGAACAGGCCCCG
chr17 chr17 59431197 59431247 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GACAGTTCCCAGGCAGCCCTCTGTTTCAGGTGTGGAACAGGCTCCGA
chr17 chr17 59431210 59431260 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CAGCCCTCTGTTTCAGGTGTGGAACAGGCTCCGA
chr17 chr17 59431215 59431265 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTCTGTTTCAGGTGTGGAACAGGCTCCGA
chr17 chr17 59431223 59431273 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CAGGTGTGGAACAGGCTCCGA
chr17 chr17 59431226 59431276 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTGTGGAACAGGCTCCGA
chr17 chr17 59431234 59431284 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CAGGCTCCGA
chr17 chr17 59431245 59431295 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         

3 pairs

31:29
89:27
65:821

MCF7 chr20-chr17 49411707 59445685 ff

106 116 167 0 37 36
CAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGAGCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAGCTGGC
00000000000008999999999999999999999999999999999999 99999999999999999999999999999999999800000000000000
BCAS4 exon1(49411465-49411709) BCAS3 exon24(59445686-59445854)

blast search - human genome

left

>ref|NC_000020.10| Homo sapiens chromosome 20, GRCh37.p2 primary reference assembly
          Length = 63025520

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49411659 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 49411708


>ref|AC_000152.1| Homo sapiens chromosome 20, alternate assembly HuRef, whole genome shotgun
                sequence
          Length = 59656706

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46160015 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 46160064


>ref|AC_000063.1| Homo sapiens chromosome 20, alternate assembly Hs_Celera, whole genome
                shotgun sequence
          Length = 59605541

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46115926 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 46115975

right

>ref|NC_000017.10| Homo sapiens chromosome 17, GRCh37.p2 primary reference assembly
          Length = 81195210

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59445686 aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 59445735


>ref|AC_000149.1| Homo sapiens chromosome 17, alternate assembly HuRef, whole genome shotgun
                sequence
          Length = 76567021

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54815325 aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 54815374


>ref|AC_000060.1| Homo sapiens chromosome 17, alternate assembly Hs_Celera, whole genome
                shotgun sequence
          Length = 77819263

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58546731 aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 58546780

blast search - nt

left

>ref|XM_001168029.1| PREDICTED: Pan troglodytes breast carcinoma amplified sequence 4,
           transcript variant 1 (BCAS4), mRNA
          Length = 1697

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 242


>ref|XM_001168054.1| PREDICTED: Pan troglodytes breast carcinoma amplified sequence 4,
           transcript variant 2 (BCAS4), mRNA
          Length = 1965

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 278


>ref|XM_514721.2| PREDICTED: Pan troglodytes breast carcinoma amplified sequence 4,
           transcript variant 3 (BCAS4), mRNA
          Length = 1832

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 242


>gb|BC047337.1| Homo sapiens breast carcinoma amplified sequence 4, mRNA (cDNA
           clone IMAGE:5500336), partial cds
          Length = 1256

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 107


>gb|BC056883.1| Homo sapiens breast carcinoma amplified sequence 4, mRNA (cDNA
           clone IMAGE:5764497), partial cds
          Length = 1524

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 101


>gb|AF361220.1| Homo sapiens breast carcinoma amplified sequence 4 (BCAS4) mRNA,
           complete cds
          Length = 968

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 278


>ref|NM_198799.2| Homo sapiens breast carcinoma amplified sequence 4 (BCAS4),
           transcript variant 2, mRNA
          Length = 1271

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 242


>ref|NM_017843.3| Homo sapiens breast carcinoma amplified sequence 4 (BCAS4),
           transcript variant 1, mRNA
          Length = 1368

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 242


>ref|NM_001010974.1| Homo sapiens breast carcinoma amplified sequence 4 (BCAS4),
           transcript variant 3, mRNA
          Length = 1136

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 242


>emb|AL031680.20| Human DNA sequence from clone RP5-850H21 on chromosome 20q13.11-13.2
             Contains the the PARD6B gene for par-6 partitioning
             defective 6 homolog beta (C. elegans), the BCAS4 gene for
             breast carcinoma amplified sequence 4 and two CpG islands,
             complete sequence
          Length = 117431

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                               
Query: 1     cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
             ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77084 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 77133


>dbj|AK000502.1| Homo sapiens cDNA FLJ20495 fis, clone KAT08572
          Length = 831

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 141


>emb|AJ511266.1| Homo sapiens partial mRNA for breast carcinoma amplified sequence 4
           protein (BCAS4 gene), isoform 1
          Length = 365

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 102


>gb|BC038381.1| Homo sapiens breast carcinoma amplified sequence 4, mRNA (cDNA
           clone MGC:21149 IMAGE:4472674), complete cds
          Length = 1180

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 128


>gb|AF361221.1| Homo sapiens breast carcinoma amplified sequence 4/3 fusion protein
           (BCAS4/BCAS3 fusion) mRNA, complete cds
          Length = 1321

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 229 cagcggggcgcgcgagctcgcgctcttcctgacccccgatcctggggccg 278


>ref|XM_002722695.1| PREDICTED: Oryctolagus cuniculus breast carcinoma amplified
           sequence 4 (LOC100354578), mRNA
          Length = 594

 Score = 87.7 bits (44), Expect = 4e-15
 Identities = 47/48 (97%)
 Strand = Plus / Plus

                                                           
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggc 48
           |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 129 cagcggggcgcgcgagctcgcgctcttcctgacccccgagcccggggc 176


>ref|XR_011531.2| PREDICTED: Macaca mulatta breast carcinoma-amplified sequence
           4-like (LOC706118), miscRNA
          Length = 624

 Score = 83.8 bits (42), Expect = 6e-14
 Identities = 48/50 (96%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           |||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 141 cagcggagcgcgggagctcgcgctcttcctgacccccgagcctggggccg 190


>ref|XM_001095529.2| PREDICTED: Macaca mulatta breast carcinoma amplified sequence 4,
           transcript variant 2 (BCAS4), mRNA
          Length = 734

 Score = 83.8 bits (42), Expect = 6e-14
 Identities = 48/50 (96%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           |||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 187 cagcggagcgcgggagctcgcgctcttcctgacccccgagcctggggccg 236


>ref|XM_002747669.1| PREDICTED: Callithrix jacchus breast carcinoma-amplified sequence
           4-like (LOC100388541), mRNA
          Length = 612

 Score = 83.8 bits (42), Expect = 6e-14
 Identities = 48/50 (96%)
 Strand = Plus / Plus

                                                             
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccg 50
           |||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 129 cagcggagcgcgcgagctcgccctcttcctgacccccgagcctggggccg 178


>ref|XM_849115.1| PREDICTED: Canis familiaris similar to breast carcinoma amplified
           sequence 4 isoform b (LOC611448), mRNA
          Length = 930

 Score = 79.8 bits (40), Expect = 1e-12
 Identities = 46/48 (95%)
 Strand = Plus / Plus

                                                           
Query: 1   cagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggc 48
           |||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 261 cagcggggcgcgcgagctcgcgctcttcctgaccccggagcccggggc 308

right

>ref|NM_001099432.1| Homo sapiens breast carcinoma amplified sequence 3 (BCAS3),
            transcript variant 1, mRNA
          Length = 3626

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2578 aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 2627


>ref|NM_017679.3| Homo sapiens breast carcinoma amplified sequence 3 (BCAS3),
            transcript variant 2, mRNA
          Length = 3581

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2533 aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 2582


>dbj|AK225757.1| Homo sapiens mRNA for Splice isoform 3 of Q9H6U6 variant, clone:
            FCC135C12
          Length = 3703

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2492 aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 2541


>gb|BC117275.1| Homo sapiens breast carcinoma amplified sequence 3, mRNA (cDNA clone
            MGC:150884 IMAGE:40125826), complete cds
          Length = 2889

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2500 aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 2549


>gb|AF361221.1| Homo sapiens breast carcinoma amplified sequence 4/3 fusion protein
           (BCAS4/BCAS3 fusion) mRNA, complete cds
          Length = 1321

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 328


>gb|AF361219.1| Homo sapiens breast carcinoma amplified sequence 3 (BCAS3) mRNA,
            complete cds
          Length = 3514

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2472 aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 2521


>gb|BC001250.1| Homo sapiens breast carcinoma amplified sequence 3, mRNA (cDNA clone
            IMAGE:3458571), partial cds
          Length = 2060

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 1069


>dbj|AK023054.1| Homo sapiens cDNA FLJ12992 fis, clone NT2RP3000149
          Length = 2903

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1880 aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 1929


>dbj|AK022526.1| Homo sapiens cDNA FLJ12464 fis, clone NT2RM1000780
          Length = 2779

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1782 aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 1831


>gb|AF260268.1|AF260268 Homo sapiens GAOB1 mRNA, complete cds
          Length = 1943

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 948


>emb|CR610433.1| full-length cDNA clone CS0DB009YB03 of Neuroblastoma Cot
          10-normalized of Homo sapiens (human)
          Length = 1011

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                            
Query: 1  aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7  aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 56


>dbj|AK025510.1| Homo sapiens cDNA: FLJ21857 fis, clone HEP02294
          Length = 3542

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2494 aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 2543


>dbj|AK000135.1| Homo sapiens cDNA FLJ20128 fis, clone COL06181
          Length = 2117

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 1060


>emb|AL831895.1| Homo sapiens mRNA; cDNA DKFZp547L188 (from clone DKFZp547L188)
          Length = 2155

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 1098


>gb|AC005746.1|AC005746 Homo sapiens chromosome 17, clone hRPK.332_H_18, complete sequence
          Length = 189356

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                               
Query: 1     aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
             ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46607 aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 46558


>gb|BC033220.1| Homo sapiens breast carcinoma amplified sequence 3, mRNA (cDNA
           clone IMAGE:5018525), with apparent retained intron
          Length = 2231

 Score = 95.6 bits (48), Expect = 2e-17
 Identities = 48/48 (100%)
 Strand = Plus / Plus

                                                           
Query: 3   gtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 gtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 983


>gb|BC029983.1| Homo sapiens breast carcinoma amplified sequence 3, mRNA (cDNA clone
            IMAGE:3917933)
          Length = 2029

 Score = 95.6 bits (48), Expect = 2e-17
 Identities = 48/48 (100%)
 Strand = Plus / Plus

                                                            
Query: 3    gtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969  gtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 1016


>gb|BC036280.1| Homo sapiens breast carcinoma amplified sequence 3, mRNA (cDNA clone
            IMAGE:3917955)
          Length = 2108

 Score = 95.6 bits (48), Expect = 2e-17
 Identities = 48/48 (100%)
 Strand = Plus / Plus

                                                            
Query: 3    gtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 gtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 1119


>gb|BC013841.1| Homo sapiens breast carcinoma amplified sequence 3, mRNA (cDNA clone
            IMAGE:3923751)
          Length = 2031

 Score = 95.6 bits (48), Expect = 2e-17
 Identities = 48/48 (100%)
 Strand = Plus / Plus

                                                            
Query: 3    gtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969  gtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 1016


>ref|XM_002834129.1| PREDICTED: Pongo abelii hypothetical protein LOC100436919
           (LOC100436919), mRNA
          Length = 693

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Minus

                                                             
Query: 1   aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
           ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 129 aggtacctttgaccggagcgtgaccctgctggaggtgtgcgggagctggc 80


>ref|XM_002834103.1| PREDICTED: Pongo abelii DKFZP468H185 protein (DKFZP468H185), mRNA
          Length = 3306

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                              
Query: 1    aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2204 aggtacctttgaccggagcgtgaccctgctggaggtgtgcgggagctggc 2253


>ref|XM_001110727.2| PREDICTED: Macaca mulatta breast carcinoma amplified sequence 3,
            transcript variant 5 (BCAS3), mRNA
          Length = 3468

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                              
Query: 1    aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2440 aggtacctttgaccggagcgtgaccctgctggaggtgtgcgggagctggc 2489


>dbj|AK314744.1| Homo sapiens cDNA, FLJ95607, highly similar to Homo sapiens breast
            carcinoma amplified sequence 3 (BCAS3), mRNA
          Length = 2796

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                              
Query: 1    aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2478 aggtacctttgacaggagcgtgaccctgctggaggtgagcgggagctggc 2527


>gb|BC149850.1| Bos taurus breast carcinoma amplified sequence 3, mRNA (cDNA clone
            IMAGE:8518099), partial cds
          Length = 3526

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                              
Query: 1    aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2442 aggtacctttgaccggagcgtgaccctgctggaggtgtgcgggagctggc 2491


>dbj|AB171019.1| Macaca fascicularis brain cDNA clone: QorA-11870, similar to human
            breast carcinoma amplified sequence 3 (BCAS3), mRNA,
            RefSeq: NM_017679.2
          Length = 2354

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                              
Query: 1    aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2097 aggtacctttgaccggagcgtgaccctgctggaggtgtgcgggagctggc 2146


>ref|XM_511611.2| PREDICTED: Pan troglodytes similar to breast carcinoma amplified
            sequence 3 (LOC454802), mRNA
          Length = 2959

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                              
Query: 1    aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2578 aggtacctttgaccggagcgtgaccctgctggaggtgtgcgggagctggc 2627


>ref|XM_537707.2| PREDICTED: Canis familiaris similar to Breast carcinoma amplified
            sequence 3 (GAOB1) (Maab1 protein) (LOC480587), mRNA
          Length = 3063

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                              
Query: 1    aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2745 aggtacctttgaccggagcgtgaccctgctggaggtgtgcgggagctggc 2794


>emb|CR859561.1| Pongo abelii mRNA; cDNA DKFZp468H185 (from clone DKFZp468H185)
          Length = 2736

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                              
Query: 1    aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2485 aggtacctttgaccggagcgtgaccctgctggaggtgtgcgggagctggc 2534


>ref|XM_002695612.1| PREDICTED: Bos taurus breast carcinoma amplified sequence 3 (BCAS3),
            partial mRNA
          Length = 2953

 Score = 83.8 bits (42), Expect = 6e-14
 Identities = 48/50 (96%)
 Strand = Plus / Plus

                                                              
Query: 1    aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2286 aggtaccttcgaccggagcgtgaccctgctggaggtgtgcgggagctggc 2335


>ref|XM_599680.5| PREDICTED: Bos taurus breast carcinoma amplified sequence 3 (BCAS3),
            mRNA
          Length = 3403

 Score = 83.8 bits (42), Expect = 6e-14
 Identities = 48/50 (96%)
 Strand = Plus / Plus

                                                              
Query: 1    aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2736 aggtaccttcgaccggagcgtgaccctgctggaggtgtgcgggagctggc 2785


>ref|XM_002719084.1| PREDICTED: Oryctolagus cuniculus breast carcinoma amplified sequence
            3 (LOC100358815), mRNA
          Length = 2742

 Score = 83.8 bits (42), Expect = 6e-14
 Identities = 48/50 (96%)
 Strand = Plus / Plus

                                                              
Query: 1    aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            ||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2424 aggtaccttcgaccggagcgtgaccctgctggaggtgtgcgggagctggc 2473


>ref|XM_415889.2| PREDICTED: Gallus gallus breast carcinoma amplified sequence 3
            (BCAS3), mRNA
          Length = 3685

 Score = 83.8 bits (42), Expect = 6e-14
 Identities = 48/50 (96%)
 Strand = Plus / Plus

                                                              
Query: 1    aggtacctttgacaggagcgtgaccctgctggaggtgtgcgggagctggc 50
            |||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2483 aggtgcctttgaccggagcgtgaccctgctggaggtgtgcgggagctggc 2532

reads

chr20 chr20 49411498 49411548 50M                            CTGCCCCGCCTCCGCCAGGCGGTCCGCGGGGCATGCAGCGGACCGGGGGC
chr20 chr20 49411512 49411562 50M                                          CCAGGCGGTCCGCGGGGCATGCAGCCGACCGGGGGGGGGGCTCCGAGGCC
chr20 chr20 49411532 49411582 50M                                                              GCAGCGGACCGGGGGCGGGGCTCCGAGGCCCGGGCGCAACCACGGGCTCC
chr20 chr20 49411535 49411585 50M                                                                 GCGGACCGGGGGCGGGGCTCCGAGGCCCGGGCGCAACCACGGGCTCCCAG
chr20 chr20 49411542 49411592 50M                                                                        GGGGGCGGGGCTCCGAGGCCCGGGCGCAACCACGGGCTCCCAGGCAGCCT
chr20 chr20 49411548 49411598 50M                                                                              GGGGCTCCGAGGCCCGGGCGCAACCACGGGCTCCCAGGCAGCCTCCGCCA
chr20 chr20 49411554 49411604 50M                                                                                    CCGAGGCCCGGGCGCAACCACGGGCTCCCAGGCAGCCTCCGCCAGCCGGA
chr20 chr20 49411560 49411610 50M                                                                                          CCCGGGCGCAACCACGGGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCGT
chr20 chr20 49411564 49411614 50M                                                                                              GGCGCAACCACGGGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCC
chr20 chr20 49411567 49411617 50M                                                                                                 GCAACCACGGGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTC
chr20 chr20 49411570 49411620 50M                                                                                                    ACCATGGGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTCCTG
chr20 chr20 49411573 49411623 50M                                                                                                       ACGGGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTCCTGATG
chr20 chr20 49411576 49411626 50M                                                                                                          GGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTCCTGATGCTG
chr20 chr20 49411580 49411630 50M                                                                                                              GCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTCCTGATGCTGCTCG
chr20 chr20 49411583 49411633 50M                                                                                                                 AGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTCCTGATGCTGCTCATGG
chr20 chr20 49411587 49411637 50M                                                                                                                     AGCCTCCGCCAGCCGGACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGC
chr20 chr20 49411590 49411640 50M                                                                                                                        CTCCGCCAGCCGGACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGA
chr20 chr20 49411593 49411643 50M                                                                                                                           CGCCAGCCGGACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCA
chr20 chr20 49411596 49411646 50M                                                                                                                              CAGCCGGACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCC
chr20 chr20 49411599 49411649 50M                                                                                                                                 CCGGACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGG
chr20 chr20 49411602 49411652 50M                                                                                                                                    GACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCC
chr20 chr20 49411605 49411655 50M                                                                                                                                       CCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCGA
chr20 chr20 49411608 49411658 50M                                                                                                                                          GTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCG
chr20 chr20 49411611 49411661 50M                                                                                                                                             GCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAG
chr20 chr20 49411614 49411664 50M                                                                                                                                                CTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGG
chr20 chr20 49411617 49411667 50M                                                                                                                                                   CTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGC
chr20 chr20 49411620 49411670 50M                                                                                                                                                      ATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCG
chr20 chr20 49411623 49411673 50M                                                                                                                                                         CTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGA
chr20 chr20 49411626 49411676 50M                                                                                                                                                            CTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCT
chr20 chr20 49411629 49411679 50M                                                                                                                                                               GTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGC
chr20 chr20 49411632 49411682 50M                                                                                                                                                                  GACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCT
chr20 chr20 49411635 49411685 50M                                                                                                                                                                     GCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTT
chr20 chr20 49411638 49411688 50M                                                                                                                                                                        GATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCT
chr20 chr20 49411641 49411691 50M                                                                                                                                                                           CAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGAC
chr20 chr20 49411644 49411694 50M                                                                                                                                                                              CCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCC
chr20 chr20 49411647 49411697 50M                                                                                                                                                                                 GAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGG
chr20 chr20 49411650 49411700 50M                                                                                                                                                                                    CCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGATCC
chr20 chr20 49411653 49411703 50M                                                                                                                                                                                       ATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGG
chr20 chr20 49411656 49411706 50M                                                                                                                                                                                          CGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGC
chr20 chr20 49411659 49411709 50M                                                                                                                                                                                             AGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCGA
chr20 chr20 49411663 49411713 50M                                                                                                                                                                                                 GGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCGAGGTA
chr20 chr17 49411666 59445693 42M59445686F8M                                                                                                                                                                                         CGCGCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCT
chr20 chr17 49411666 59445693 42M59445686F8M                                                                                                                                                                                         CGCGCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCT
chr20 chr17 49411666 59445693 42M59445686F8M                                                                                                                                                                                         CGCGCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCT
chr20 chr17 49411667 59445694 41M59445686F9M                                                                                                                                                                                          GCGCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTT
chr20 chr17 49411668 59445695 40M59445686F10M                                                                                                                                                                                          CGCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTT
chr20 chr17 49411668 59445695 40M59445686F10M                                                                                                                                                                                          CGCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTT
chr20 chr17 49411668 59445695 40M59445686F10M                                                                                                                                                                                          CGCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTT
chr20 chr17 49411668 59445695 40M59445686F10M                                                                                                                                                                                          CGCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTT
chr20 chr17 49411668 59445695 40M59445686F10M                                                                                                                                                                                          CGCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTT
chr20 chr17 49411668 59445695 40M59445686F10M                                                                                                                                                                                          CGCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTT
chr20 chr17 49411669 59445696 39M59445686F11M                                                                                                                                                                                           GCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTG
chr20 chr17 49411669 59445696 39M59445686F11M                                                                                                                                                                                           GCGAGCGCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTG
chr20 chr17 49411669 59445696 39M59445686F11M                                                                                                                                                                                           GCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTG
chr20 chr17 49411669 59445696 39M59445686F11M                                                                                                                                                                                           CCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTG
chr20 chr17 49411670 59445697 38M59445686F12M                                                                                                                                                                                            CGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGA
chr20 chr17 49411670 59445697 38M59445686F12M                                                                                                                                                                                            CGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGA
chr20 chr17 49411670 59445697 38M59445686F12M                                                                                                                                                                                            CGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGA
chr20 chr17 49411671 59445698 37M59445686F13M                                                                                                                                                                                             GAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGAC
chr20 chr17 49411671 59445698 37M59445686F13M                                                                                                                                                                                             GAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGAC
chr20 chr17 49411671 59445698 37M59445686F13M                                                                                                                                                                                             GAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGAC
chr20 chr17 49411671 59445698 37M59445686F13M                                                                                                                                                                                             GAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGAC
chr20 chr17 49411671 59445698 37M59445686F13M                                                                                                                                                                                             GAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGAC
chr20 chr17 49411671 59445698 37M59445686F13M                                                                                                                                                                                             GAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGAC
chr20 chr17 49411671 59445698 37M59445686F13M                                                                                                                                                                                             GAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGAC
chr20 chr17 49411671 59445698 37M59445686F13M                                                                                                                                                                                             GAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGAC
chr20 chr17 49411672 59445699 36M59445686F14M                                                                                                                                                                                              AGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACG
chr20 chr17 49411672 59445699 36M59445686F14M                                                                                                                                                                                              AGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACG
chr20 chr17 49411673 59445700 35M59445686F15M                                                                                                                                                                                               GCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAG
chr20 chr17 49411673 59445700 35M59445686F15M                                                                                                                                                                                               GCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAG
chr20 chr17 49411674 59445701 34M59445686F16M                                                                                                                                                                                                CTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGG
chr20 chr17 49411674 59445701 34M59445686F16M                                                                                                                                                                                                CTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGG
chr20 chr17 49411674 59445701 34M59445686F16M                                                                                                                                                                                                CTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGG
chr20 chr17 49411675 59445702 33M59445686F17M                                                                                                                                                                                                 TCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGA
chr20 chr17 49411675 59445702 33M59445686F17M                                                                                                                                                                                                 TCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACGTTTGACAGGA
chr20 chr17 49411675 59445702 33M59445686F17M                                                                                                                                                                                                 TCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGA
chr20 chr17 49411675 59445702 33M59445686F17M                                                                                                                                                                                                 TCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGA
chr20 chr17 49411675 59445702 33M59445686F17M                                                                                                                                                                                                 TCGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGA
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACCGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGGCCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411676 59445703 32M59445686F18M                                                                                                                                                                                                  CGCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAG
chr20 chr17 49411677 59445704 31M59445686F19M                                                                                                                                                                                                   GCGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGC
chr20 chr17 49411678 59445705 30M59445686F20M                                                                                                                                                                                                    CGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCG
chr20 chr17 49411678 59445705 30M59445686F20M                                                                                                                                                                                                    CGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCG
chr20 chr17 49411678 59445705 30M59445686F20M                                                                                                                                                                                                    CGCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCG
chr20 chr17 49411679 59445706 29M59445686F21M                                                                                                                                                                                                     GCTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGT
chr20 chr17 49411680 59445707 28M59445686F22M                                                                                                                                                                                                      CTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTG
chr20 chr17 49411680 59445707 28M59445686F22M                                                                                                                                                                                                      CTCTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTG
chr20 chr17 49411680 59445707 28M59445686F22M                                                                                                                                                                                                      CTCTTCCCGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTG
chr20 chr17 49411682 59445709 26M59445686F24M                                                                                                                                                                                                        CTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGAC
chr20 chr17 49411682 59445709 26M59445686F24M                                                                                                                                                                                                        CTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGAC
chr20 chr17 49411682 59445709 26M59445686F24M                                                                                                                                                                                                        CTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGAC
chr20 chr17 49411682 59445709 26M59445686F24M                                                                                                                                                                                                        CTTCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGAC
chr20 chr17 49411684 59445711 24M59445686F26M                                                                                                                                                                                                          TCCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCC
chr20 chr17 49411685 59445712 23M59445686F27M                                                                                                                                                                                                           CCTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCT
chr20 chr17 49411686 59445713 22M59445686F28M                                                                                                                                                                                                            CTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCCG
chr20 chr17 49411686 59445713 22M59445686F28M                                                                                                                                                                                                            CTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTG
chr20 chr17 49411686 59445713 22M59445686F28M                                                                                                                                                                                                            CTGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTG
chr20 chr17 49411687 59445714 21M59445686F29M                                                                                                                                                                                                             TGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGC
chr20 chr17 49411687 59445714 21M59445686F29M                                                                                                                                                                                                             TGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGC
chr20 chr17 49411687 59445714 21M59445686F29M                                                                                                                                                                                                             TGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGC
chr20 chr17 49411687 59445714 21M59445686F29M                                                                                                                                                                                                             TGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGC
chr20 chr17 49411687 59445714 21M59445686F29M                                                                                                                                                                                                             TGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGC
chr20 chr17 49411687 59445714 21M59445686F29M                                                                                                                                                                                                             TGACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGC
chr20 chr17 49411688 59445715 20M59445686F30M                                                                                                                                                                                                              GACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCA
chr20 chr17 49411688 59445715 20M59445686F30M                                                                                                                                                                                                              GACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCC
chr20 chr17 49411688 59445715 20M59445686F30M                                                                                                                                                                                                              GACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCT
chr20 chr17 49411688 59445715 20M59445686F30M                                                                                                                                                                                                              GACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCT
chr20 chr17 49411689 59445716 19M59445686F31M                                                                                                                                                                                                               ACCCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTG
chr20 chr17 49411691 59445718 17M59445686F33M                                                                                                                                                                                                                 CCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGA
chr20 chr17 49411691 59445718 17M59445686F33M                                                                                                                                                                                                                 CCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGA
chr20 chr17 49411691 59445718 17M59445686F33M                                                                                                                                                                                                                 CCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGA
chr20 chr17 49411691 59445718 17M59445686F33M                                                                                                                                                                                                                 CCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGA
chr20 chr17 49411691 59445718 17M59445686F33M                                                                                                                                                                                                                 CCCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGA
chr20 chr17 49411692 59445719 16M59445686F34M                                                                                                                                                                                                                  CCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAG
chr20 chr17 49411692 59445719 16M59445686F34M                                                                                                                                                                                                                  CCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAG
chr20 chr17 49411692 59445719 16M59445686F34M                                                                                                                                                                                                                  CCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGGCCCTGCTGGAG
chr20 chr17 49411692 59445719 16M59445686F34M                                                                                                                                                                                                                  CCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAG
chr20 chr17 49411692 59445719 16M59445686F34M                                                                                                                                                                                                                  CCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAG
chr20 chr17 49411692 59445719 16M59445686F34M                                                                                                                                                                                                                  CCCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAG
chr20 chr17 49411693 59445720 15M59445686F35M                                                                                                                                                                                                                   CCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGG
chr20 chr17 49411693 59445720 15M59445686F35M                                                                                                                                                                                                                   CCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGG
chr20 chr17 49411693 59445720 15M59445686F35M                                                                                                                                                                                                                   CCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGG
chr20 chr17 49411693 59445720 15M59445686F35M                                                                                                                                                                                                                   CCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGG
chr20 chr17 49411693 59445720 15M59445686F35M                                                                                                                                                                                                                   CCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGG
chr20 chr17 49411693 59445720 15M59445686F35M                                                                                                                                                                                                                   CCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGG
chr20 chr17 49411693 59445720 15M59445686F35M                                                                                                                                                                                                                   CCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGG
chr20 chr17 49411693 59445720 15M59445686F35M                                                                                                                                                                                                                   CCGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGG
chr20 chr17 49411694 59445721 14M59445686F36M                                                                                                                                                                                                                    CGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGT
chr20 chr17 49411694 59445721 14M59445686F36M                                                                                                                                                                                                                    CGATCCAGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGT
chr20 chr17 49411694 59445721 14M59445686F36M                                                                                                                                                                                                                    CGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGT
chr20 chr17 49411694 59445721 14M59445686F36M                                                                                                                                                                                                                    CGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGT
chr20 chr17 49411694 59445721 14M59445686F36M                                                                                                                                                                                                                    CGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGT
chr20 chr17 49411694 59445721 14M59445686F36M                                                                                                                                                                                                                    CGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGT
chr20 chr17 49411694 59445721 14M59445686F36M                                                                                                                                                                                                                    CGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGT
chr20 chr17 49411694 59445721 14M59445686F36M                                                                                                                                                                                                                    CGATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGT
chr20 chr17 49411696 59445723 12M59445686F38M                                                                                                                                                                                                                      ATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGCGGTGT
chr20 chr17 49411696 59445723 12M59445686F38M                                                                                                                                                                                                                      ATCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGT
chr20 chr17 49411697 59445724 11M59445686F39M                                                                                                                                                                                                                       TCCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTG
chr20 chr17 49411697 59445724 11M59445686F39M                                                                                                                                                                                                                       ATCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTG
chr20 chr17 49411698 59445725 10M59445686F40M                                                                                                                                                                                                                        CCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGC
chr20 chr17 49411698 59445725 10M59445686F40M                                                                                                                                                                                                                        CCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGC
chr20 chr17 49411698 59445725 10M59445686F40M                                                                                                                                                                                                                        TCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGC
chr20 chr17 49411698 59445725 10M59445686F40M                                                                                                                                                                                                                        CCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGC
chr20 chr17 49411698 59445725 10M59445686F40M                                                                                                                                                                                                                        CCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGC
chr20 chr17 49411698 59445725 10M59445686F40M                                                                                                                                                                                                                        CCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGC
chr20 chr17 49411698 59445725 10M59445686F40M                                                                                                                                                                                                                        CCTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGC
chr20 chr17 49411699 59445726 9M59445686F41M                                                                                                                                                                                                                          CTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCN
chr20 chr17 49411699 59445726 9M59445686F41M                                                                                                                                                                                                                          CTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCG
chr20 chr17 49411699 59445726 9M59445686F41M                                                                                                                                                                                                                          CTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCG
chr20 chr17 49411699 59445726 9M59445686F41M                                                                                                                                                                                                                          CTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCG
chr20 chr17 49411699 59445726 9M59445686F41M                                                                                                                                                                                                                          CTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCG
chr20 chr17 49411699 59445726 9M59445686F41M                                                                                                                                                                                                                          CTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCG
chr20 chr17 49411699 59445726 9M59445686F41M                                                                                                                                                                                                                          CTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCG
chr20 chr17 49411699 59445726 9M59445686F41M                                                                                                                                                                                                                          CTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGAG
chr20 chr17 49411699 59445726 9M59445686F41M                                                                                                                                                                                                                          CTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCG
chr20 chr17 49411699 59445726 9M59445686F41M                                                                                                                                                                                                                          CTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCG
chr20 chr17 49411699 59445726 9M59445686F41M                                                                                                                                                                                                                          CTGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCG
chr20 chr17 49411700 59445727 8M59445686F42M                                                                                                                                                                                                                           TGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGG
chr20 chr17 49411700 59445727 8M59445686F42M                                                                                                                                                                                                                           TGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGG
chr20 chr17 49411700 59445727 8M59445686F42M                                                                                                                                                                                                                           TGGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGG
chr20 chr17 49411701 59445728 7M59445686F43M                                                                                                                                                                                                                            GGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGG
chr20 chr17 49411701 59445728 7M59445686F43M                                                                                                                                                                                                                            GGGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGG
chr20 chr17 49411702 59445729 6M59445686F44M                                                                                                                                                                                                                             GGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGA
chr20 chr17 49411702 59445729 6M59445686F44M                                                                                                                                                                                                                             GGGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGA
chr20 chr17 49411703 59445730 5M59445686F45M                                                                                                                                                                                                                              GGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAG
chr20 chr17 49411703 59445730 5M59445686F45M                                                                                                                                                                                                                              GGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGAGTGTGGGAG
chr20 chr17 49411703 59445730 5M59445686F45M                                                                                                                                                                                                                              GGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAG
chr20 chr17 49411703 59445730 5M59445686F45M                                                                                                                                                                                                                              GGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAG
chr20 chr17 49411703 59445730 5M59445686F45M                                                                                                                                                                                                                              GGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAG
chr20 chr17 49411703 59445730 5M59445686F45M                                                                                                                                                                                                                              GGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAG
chr20 chr17 49411703 59445730 5M59445686F45M                                                                                                                                                                                                                              GGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAG
chr20 chr17 49411703 59445730 5M59445686F45M                                                                                                                                                                                                                              GGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAG
chr20 chr17 49411703 59445730 5M59445686F45M                                                                                                                                                                                                                              GGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAG
chr20 chr17 49411703 59445730 5M59445686F45M                                                                                                                                                                                                                              GGCCG AGGTACCTTTGACAGGAGCGTGACCCCGCTGGAGGTGTGCGGGAG
chr20 chr17 49411703 59445730 5M59445686F45M                                                                                                                                                                                                                              GGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAG
chr20 chr17 49411703 59445730 5M59445686F45M                                                                                                                                                                                                                              GGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAG
chr20 chr17 49411703 59445730 5M59445686F45M                                                                                                                                                                                                                              GGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAG
chr20 chr17 49411703 59445730 5M59445686F45M                                                                                                                                                                                                                              GGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAG
chr20 chr17 49411703 59445730 5M59445686F45M                                                                                                                                                                                                                              GGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAG
chr20 chr17 49411703 59445730 5M59445686F45M                                                                                                                                                                                                                              GGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAG
chr20 chr17 49411703 59445730 5M59445686F45M                                                                                                                                                                                                                              GGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAG
chr20 chr17 49411703 59445730 5M59445686F45M                                                                                                                                                                                                                              GGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAG
chr20 chr17 49411703 59445730 5M59445686F45M                                                                                                                                                                                                                              GGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAG
chr20 chr17 49411703 59445730 5M59445686F45M                                                                                                                                                                                                                              GGCCG AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAG
chr20 chr17 49411704 59445731 4M59445686F46M                                                                                                                                                                                                                               GCCG AGGTACCTGTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAGG
chr17 chr17 59445682 59445732 50M                                                                                                                                                                                                                                            CCGAGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAGCT
chr17 chr17 59445685 59445735 50M                                                                                                                                                                                                                                               AGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAGCTGGC
chr17 chr17 59445689 59445739 50M                                                                                                                                                                                                                                                   ACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAGCTGGCCTGA
chr17 chr17 59445692 59445742 50M                                                                                                                                                                                                                                                      GTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAGCTGGCCTGAGGG
chr17 chr17 59445695 59445745 50M                                                                                                                                                                                                                                                         GACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAGCTGGCCTGAGGGCTT
chr17 chr17 59445698 59445748 50M                                                                                                                                                                                                                                                            AGGAGCGTGAACCTGCTGGAGGTGTGCGGGAGCTGGCCTGAGGGCTTCGG
chr17 chr17 59445701 59445751 50M                                                                                                                                                                                                                                                               AGCGTGACCCTGCTGGAGGTGTGCGGGAGCTGGCCTGAGGGCTTCGGGCC
chr17 chr17 59445704 59445754 50M                                                                                                                                                                                                                                                                  GTGACCCTGCTGGAGGTGTGCGGGAGCTGGCCTGAGGGCTTCGGGCTGCG
chr17 chr17 59445707 59445757 50M                                                                                                                                                                                                                                                                     ACCCTGCTGGAGGTGTGCGGGAGCTGGCCTGAGGGCTTCGGGCTGCGGCA
chr17 chr17 59445710 59445760 50M                                                                                                                                                                                                                                                                        CTGCTGGAGATGTGCGGGAGCTGGCCTGAGGGCTTCGGGCTGCGGCACAT
chr17 chr17 59445713 59445763 50M                                                                                                                                                                                                                                                                           CTGGAGGTGTGCGGGAGCTGGCCTGAGGGCTTCGGGCTGCGGCACATGTC
chr17 chr17 59445717 59445767 50M                                                                                                                                                                                                                                                                               AGGTGTGCGGGAGCTGGCCTGAGGGCTTCGGGCTGCGGCACATGTCCTCC
chr17 chr17 59445720 59445770 50M                                                                                                                                                                                                                                                                                  TGTGCGGGAGCTGGCCTGAGGGCTTCGGGCTGCGGCACATGTCCTCCATG
chr17 chr17 59445723 59445773 50M                                                                                                                                                                                                                                                                                     GCGGGAGCTGGCCTGAGGGCTTCGGGCTGCGGCACATGTCCTCCATGGAG
chr17 chr17 59445726 59445776 50M                                                                                                                                                                                                                                                                                        GGAGCTGGCCTGAGGGCTTCGGGCTGCGGCACATGTCCTCGATGGAGCAC
chr17 chr17 59445729 59445779 50M                                                                                                                                                                                                                                                                                           GCTGGCCTGAGGGCTTCGGGCTGCGGCACATGTCCTCCATGGAGCACACG
chr17 chr17 59445732 59445782 50M                                                                                                                                                                                                                                                                                              CGCCTCAGGGCTTCGGGCTGCGGCACATGTCCTCCATGGAGCACACGGAG
chr17 chr17 59445735 59445785 50M                                                                                                                                                                                                                                                                                                 CTGAGGGCTTCGGGCTGCGGCACATGTCCTCCATGGAGCACACGGAGGAG
chr17 chr17 59445738 59445788 50M                                                                                                                                                                                                                                                                                                    AGGGCTTCGGGCTGCGGCACATGTCCTCCATGGAGCACACGGAGGAGGGC
chr17 chr17 59445741 59445791 50M                                                                                                                                                                                                                                                                                                       GCTTCGGGCTGCGGCACATGTCCTCCATGGAGCACACGGAGGAGGGCCTC
chr17 chr17 59445744 59445794 50M                                                                                                                                                                                                                                                                                                          TCGGGCTGCGGCACATGTCCTCCATGGAGCACACGGAGGAGGGCCTCCGG
chr17 chr17 59445747 59445797 50M                                                                                                                                                                                                                                                                                                             GGCTGCGGCACATGTCCTCCATGGAGCACACGGAGGAGGGCCTCCGGGAG
chr17 chr17 59445750 59445800 50M                                                                                                                                                                                                                                                                                                                TGCGGCACATGTCCTCCATGGAGCACACGGAGGAGGGCCTCCGGGAGCGA
chr17 chr17 59445753 59445803 50M                                                                                                                                                                                                                                                                                                                   GGCACATGTCCTCCATGGAGCACACGGAGGAGGGCCTCCGGGAGCGACTT
chr17 chr17 59445756 59445806 50M                                                                                                                                                                                                                                                                                                                      ACATGTCCTCCATGGAGCACACGGAGGAGGGCCTCCGGGAGCGACTTGCC
chr17 chr17 59445759 59445809 50M                                                                                                                                                                                                                                                                                                                         TGTCCTCCATGGAGCACACGGAGGAGGGCCTCCGGGAGCGACTTGCCGAC
chr17 chr17 59445762 59445812 50M                                                                                                                                                                                                                                                                                                                            CCTCCATGGAGCACACGGAGGAGGGCCTCCGGGAGCGACTTGCCGACGCC
chr17 chr17 59445765 59445815 50M                                                                                                                                                                                                                                                                                                                               CCATGGAGCACACGGAGGAGGGCCTCCGGGAGCGACTTGCCGACGCCATG
chr17 chr17 59445768 59445818 50M                                                                                                                                                                                                                                                                                                                                  TGGAGCACACGGAGGAGGGCCTCCGGGAGCGACTTGCCGACGCCATGGCC
chr17 chr17 59445771 59445821 50M                                                                                                                                                                                                                                                                                                                                     AGCACACGGAGGAGGGCCTCCGGGAGCGACTTGCCGACGCCATGGCCGAG
chr17 chr17 59445774 59445824 50M                                                                                                                                                                                                                                                                                                                                        ACACGGAGGAGGGCCTCCGGGAGCGACTTGCCGACGCCATGGCCGAGTCA
chr17 chr17 59445777 59445827 50M                                                                                                                                                                                                                                                                                                                                           CGGAGGAGGGCCTCCGGGAGCGACTTGCCGACGCCATGGCCGAGTCACCT
chr17 chr17 59445780 59445830 50M                                                                                                                                                                                                                                                                                                                                              AGGAGGGCCTCCGGGAGCGACTTGCCGACGCCATGGCCGAGTCACCTAGC
chr17 chr17 59445783 59445833 50M                                                                                                                                                                                                                                                                                                                                                 AGGGCCTCCGGGAGCGACTTGCCGACGCCATGGCCGAGTCACCTAGCCGG
chr17 chr17 59445786 59445836 50M                                                                                                                                                                                                                                                                                                                                                    GCCTCCGGGAGCGACTTGCCGACGCCATGGCCGAGTCACCTAGCCGGGAC
chr17 chr17 59445789 59445839 50M                                                                                                                                                                                                                                                                                                                                                       GACGGGAGCGACTTGCCGACGCCATGGCCGAGTCACCTAGCCGGGACGTC
chr17 chr17 59445792 59445842 50M                                                                                                                                                                                                                                                                                                                                                          GGGAGCGACTTGCCGACGCCATGGCCGAGTCACCTAGCCGGGACGTCGTG
chr17 chr17 59445795 59445845 50M                                                                                                                                                                                                                                                                                                                                                             AGCGACTTGCCGACGCCATGGCCGAGTCACCTAGCCGGGACGTCGTGGGA
chr17 chr17 59445798 59445848 50M                                                                                                                                                                                                                                                                                                                                                                GACTTGCCGACGCCATGGCCGAGTCACCTAGCCGGGACGTCGTGGGATCC
chr17 chr17 59445801 59445851 50M                                                                                                                                                                                                                                                                                                                                                                   TTGCCGACGCCATGGCCGAGTCACCTAGCCGGGACGTCGTGGGATCCGGA
chr17 chr17 59445804 59445854 50M                                                                                                                                                                                                                                                                                                                                                                      CCGACGCCATGGCCGAGTCACCTAGCCGGGACGTCGTGGGATCCGGAACA
chr17 chr17 59445807 59445857 50M                                                                                                                                                                                                                                                                                                                                                                         ACGCCATGGCCGAGTCACCTAGCCGGGACGTCGTGGGATCCGGAACAGAC
chr17 chr17 59445810 59457871 45M12011N5M                                                                                                                                                                                                                                                                                                                                                                    CCATGGCCGAGTCACCTAGCCGGGACGTCGTGGGATCCGGAACAG||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
chr17 chr17 59445813 59469345 42M23482N8M                                                                                                                                                                                                                                                                                                                                                                       TGGCCGAGTCACCTAGCCGGGACGTCGTGGGATCCGGAACAG||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
chr17 chr17 59445816 59469348 39M23482N11M                                                                                                                                                                                                                                                                                                                                                                         CCGAGTCACCTAGCCGGGACGTCGTGGGATCCGGAACAG||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
chr17 chr17 59445819 59469351 36M23482N14M                                                                                                                                                                                                                                                                                                                                                                            AGTCACCTAGCCGGGACGTCGTGGGAACCGGAACAG||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
chr17 chr17 59445822 59469354 33M23482N17M                                                                                                                                                                                                                                                                                                                                                                               CACCTAGCCGGGACGTCGTGGGATCCGGAACAG||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
chr17 chr17 59445825 59469357 30M23482N20M                                                                                                                                                                                                                                                                                                                                                                                  CTAGCCGGGACGTCGTGGGATCCGGAACAG||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
chr17 chr17 59445828 59469360 27M23482N23M                                                                                                                                                                                                                                                                                                                                                                                     GCCGGGACGTCGTGGGATCCGGAACAG||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||

116 pairs

-6:1
11:0
16:-3
18:1
14:6
14:6
15:7
23:0
5:21
31:5
18:19
36:-1
26:12
0:47
33:15
50:0
-3:48
2:52
33:23
53:-3
50:6
14:43
16:45
14:48
31:32
43:21
49:15
11:53
13:52
43:23
21:46
22:46
49:19
5:64
56:13
23:47
50:22
33:39
36:37
36:39
24:53
31:46
65:13
31:47
34:45
31:48
-6:75
77:4
81:0
28:53
8:74
43:39
3:79
49:35
22:62
36:48
31:54
22:64
50:36
38:48
39:47
14:72
47:40
51:36
2:86
89:0
50:39
50:39
31:59
49:41
42:50
14:82
73:23
50:46
51:47
16:82
26:73
23:76
1:98
50:50
62:39
31:70
49:53
64:39
50:53
50:54
51:53
42:62
56:50
58:48
31:77
50:59
50:59
26:84
51:61
14:98
15:98
51:62
75:39
23:91
40:74
7:109
56:60
1:115
1:116
35:84
85:34
69:50
49:72
36:85
83:39
75:48
86:39
49:76
89:41
-1758:16

MCF7 chr17-chr17 57184949 57915653 ff

5 3 3 8 37 36
ATCTGCTTTCTACAGTTTCCTGCCAGATGTGTAAAGATTGCAAGAATTGA AGTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTA
00000000000001111111122222222233344455555555555555 55555555555554444444433333333322211100000000000000
ENSG00000224738 exon1(57183957-57184951) TMEM49 exon11(57915654-57915757)

blast search - human genome

left

>ref|NC_000017.10| Homo sapiens chromosome 17, GRCh37.p2 primary reference assembly
          Length = 81195210

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        atctgctttctacagtttcctgccagatgtgtaaagattgcaagaattga 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57184901 atctgctttctacagtttcctgccagatgtgtaaagattgcaagaattga 57184950


>ref|AC_000149.1| Homo sapiens chromosome 17, alternate assembly HuRef, whole genome shotgun
                sequence
          Length = 76567021

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        atctgctttctacagtttcctgccagatgtgtaaagattgcaagaattga 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52545486 atctgctttctacagtttcctgccagatgtgtaaagattgcaagaattga 52545535


>ref|AC_000060.1| Homo sapiens chromosome 17, alternate assembly Hs_Celera, whole genome
                shotgun sequence
          Length = 77819263

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        atctgctttctacagtttcctgccagatgtgtaaagattgcaagaattga 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53647541 atctgctttctacagtttcctgccagatgtgtaaagattgcaagaattga 53647590

right

>ref|NC_000017.10| Homo sapiens chromosome 17, GRCh37.p2 primary reference assembly
          Length = 81195210

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        agtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57915654 agtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 57915703


>ref|AC_000149.1| Homo sapiens chromosome 17, alternate assembly HuRef, whole genome shotgun
                sequence
          Length = 76567021

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        agtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53288143 agtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 53288192


>ref|AC_000060.1| Homo sapiens chromosome 17, alternate assembly Hs_Celera, whole genome
                shotgun sequence
          Length = 77819263

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        agtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54379167 agtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 54379216

blast search - nt

left

>ref|XR_115135.1| PREDICTED: Homo sapiens hypothetical LOC100506847 (LOC100506847),
            partial miscRNA
          Length = 1332

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    atctgctttctacagtttcctgccagatgtgtaaagattgcaagaattga 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 atctgctttctacagtttcctgccagatgtgtaaagattgcaagaattga 1100


>ref|XR_109417.1| PREDICTED: Homo sapiens hypothetical LOC100506847 (LOC100506847),
            partial miscRNA
          Length = 1332

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    atctgctttctacagtttcctgccagatgtgtaaagattgcaagaattga 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 atctgctttctacagtttcctgccagatgtgtaaagattgcaagaattga 1100


>ref|XR_111729.1| PREDICTED: Homo sapiens hypothetical LOC100506847 (LOC100506847),
            partial miscRNA
          Length = 1333

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    atctgctttctacagtttcctgccagatgtgtaaagattgcaagaattga 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 atctgctttctacagtttcctgccagatgtgtaaagattgcaagaattga 1101


>ref|NG_009298.1| Homo sapiens tripartite motif-containing 37 (TRIM37), RefSeqGene on
            chromosome 17
          Length = 131268

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                              
Query: 1    atctgctttctacagtttcctgccagatgtgtaaagattgcaagaattga 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4366 atctgctttctacagtttcctgccagatgtgtaaagattgcaagaattga 4317


>gb|BC017255.2| Homo sapiens cDNA clone IMAGE:3352705, **** WARNING: chimeric clone
            ****
          Length = 2472

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    atctgctttctacagtttcctgccagatgtgtaaagattgcaagaattga 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2060 atctgctttctacagtttcctgccagatgtgtaaagattgcaagaattga 2109


>gb|BC011742.2| Homo sapiens cDNA clone IMAGE:3350145, **** WARNING: chimeric clone
            ****
          Length = 2472

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    atctgctttctacagtttcctgccagatgtgtaaagattgcaagaattga 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2060 atctgctttctacagtttcctgccagatgtgtaaagattgcaagaattga 2109


>gb|AC099850.7| Homo sapiens chromosome 17, clone CTD-2510F5, complete sequence
          Length = 210344

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                
Query: 1      atctgctttctacagtttcctgccagatgtgtaaagattgcaagaattga 50
              ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156686 atctgctttctacagtttcctgccagatgtgtaaagattgcaagaattga 156637


>gb|AC147317.3| Pan troglodytes BAC clone RP43-49P4 from chromosome 7, complete
             sequence
          Length = 196949

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Minus

                                                               
Query: 1     atctgctttctacagtttcctgccagatgtgtaaagattgcaagaattga 50
             |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 64874 atctgctttctacaatttcctgccagatgtgtaaagattgcaagaattga 64825

right

>ref|NM_001190897.1| Macaca mulatta transmembrane protein 49 (TMEM49), mRNA
          Length = 1437

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1070


>ref|XM_002748174.1| PREDICTED: Callithrix jacchus transmembrane protein 49-like,
            transcript variant 4 (LOC100407303), mRNA
          Length = 1512

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982  gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1030


>ref|XM_002748173.1| PREDICTED: Callithrix jacchus transmembrane protein 49-like,
           transcript variant 3 (LOC100407303), mRNA
          Length = 1422

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                            
Query: 2   gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 940


>ref|XM_002748172.1| PREDICTED: Callithrix jacchus transmembrane protein 49-like,
           transcript variant 2 (LOC100407303), mRNA
          Length = 1356

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                            
Query: 2   gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 874


>ref|XM_002748171.1| PREDICTED: Callithrix jacchus transmembrane protein 49-like,
            transcript variant 1 (LOC100407303), mRNA
          Length = 2017

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1089 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1137


>dbj|AB528826.1| Synthetic construct DNA, clone: pF1KE0432, Homo sapiens TMEM49 gene
            for transmembrane protein 49, without stop codon, in
            Flexi system
          Length = 1235

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983  gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1031


>dbj|AK294854.1| Homo sapiens cDNA FLJ50508 complete cds, highly similar to Homo
            sapiens transmembrane protein 49 (TMEM49), mRNA
          Length = 1332

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993  gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1041


>dbj|AK301254.1| Homo sapiens cDNA FLJ50706 complete cds, highly similar to Homo
            sapiens transmembrane protein 49 (TMEM49), mRNA
          Length = 1430

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963  gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1011


>dbj|AK293664.1| Homo sapiens cDNA FLJ50453 complete cds, highly similar to Homo
           sapiens transmembrane protein 49 (TMEM49), mRNA
          Length = 1358

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                            
Query: 2   gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 907


>dbj|AK293578.1| Homo sapiens cDNA FLJ52586 complete cds, highly similar to Homo
           sapiens transmembrane protein 49 (TMEM49), mRNA
          Length = 1406

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                            
Query: 2   gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 947


>ref|NM_030938.3| Homo sapiens transmembrane protein 49 (TMEM49), mRNA
          Length = 2197

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1247 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1295


>dbj|AB047551.1| Homo sapiens mRNA, novel lipopolysaccharide-inducible gene, complete
            cds
          Length = 1221

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974  gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1022


>gb|DQ892569.2| Synthetic construct clone IMAGE:100005199; FLH187623.01X;
            RZPDo839B05150D transmembrane protein 49 (TMEM49) gene,
            encodes complete protein
          Length = 1261

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996  gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1044


>dbj|AB171376.1| Macaca fascicularis brain cDNA clone: QorA-21631, similar to human
            likely ortholog of rat vacuole membrane protein 1(VMP1),
            mRNA, RefSeq: NM_030938.2
          Length = 2016

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1078 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1126


>dbj|AB170352.1| Macaca fascicularis brain cDNA clone: QmoA-10458, similar to human
            likely ortholog of rat vacuole membrane protein 1(VMP1),
            mRNA, RefSeq: NM_030938.2
          Length = 1277

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1108


>emb|AM393627.1| Synthetic construct Homo sapiens clone IMAGE:100001781 for
            hypothetical protein (TMEM49 gene)
          Length = 1260

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994  gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1042


>emb|AM393551.1| Synthetic construct Homo sapiens clone IMAGE:100001787 for
            hypothetical protein (TMEM49 gene)
          Length = 1260

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994  gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1042


>ref|XM_001137010.1| PREDICTED: Pan troglodytes transmembrane protein 49, transcript
            variant 6 (TMEM49), mRNA
          Length = 6133

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2069 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 2117


>ref|XM_001136208.1| PREDICTED: Pan troglodytes transmembrane protein 49, transcript
            variant 1 (TMEM49), mRNA
          Length = 4661

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1958 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 2006


>ref|XM_001136866.1| PREDICTED: Pan troglodytes transmembrane protein 49, transcript
            variant 4 (TMEM49), mRNA
          Length = 4691

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1988 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 2036


>ref|XM_511922.2| PREDICTED: Pan troglodytes transmembrane protein 49, transcript
            variant 7 (TMEM49), mRNA
          Length = 4772

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2069 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 2117


>ref|XM_001136792.1| PREDICTED: Pan troglodytes transmembrane protein 49, transcript
            variant 3 (TMEM49), mRNA
          Length = 4098

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1395 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1443


>ref|XM_001136704.1| PREDICTED: Pan troglodytes transmembrane protein 49, transcript
            variant 2 (TMEM49), mRNA
          Length = 3741

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1086


>ref|XM_001136943.1| PREDICTED: Pan troglodytes transmembrane protein 49, transcript
            variant 5 (TMEM49), mRNA
          Length = 4811

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2108 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 2156


>gb|AF214006.1|AF214006 Homo sapiens TDC1 (TDC1) mRNA, complete cds
          Length = 2530

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1087 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1135


>ref|NM_001132442.1| Pongo abelii transmembrane protein 49 (TMEM49), mRNA
 emb|CR859383.1| Pongo abelii mRNA; cDNA DKFZp459F2029 (from clone DKFZp459F2029)
          Length = 2630

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1157


>emb|CR623568.1| full-length cDNA clone CS0DA002YF12 of Neuroblastoma of Homo sapiens
            (human)
          Length = 1978

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1117


>emb|CR608437.1| full-length cDNA clone CS0DN002YI16 of Adult brain of Homo sapiens
            (human)
          Length = 1973

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1129


>emb|CR597083.1| full-length cDNA clone CS0DA003YA18 of Neuroblastoma of Homo sapiens
            (human)
          Length = 1984

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1140


>emb|CR533521.1| Homo sapiens full open reading frame cDNA clone RZPDo834B1219D for
            gene VMP1, likely ortholog of rat vacuole membrane
            protein 1; complete cds, incl. stopcodon
          Length = 1301

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974  gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1022


>gb|BC009758.2| Homo sapiens transmembrane protein 49, mRNA (cDNA clone MGC:11204
            IMAGE:3927937), complete cds
          Length = 1800

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1098 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1146


>emb|AL136711.1| Homo sapiens mRNA; cDNA DKFZp566I133 (from clone DKFZp566I133)
          Length = 2052

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1155


>dbj|AK025987.1| Homo sapiens cDNA: FLJ22334 fis, clone HRC05837, highly similar to
            AF161410 Homo sapiens HSPC292 mRNA
          Length = 1929

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986  gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1034


>dbj|AK024969.1| Homo sapiens cDNA: FLJ21316 fis, clone COL02253, highly similar to
            AF161410 Homo sapiens HSPC292 mRNA
          Length = 2047

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 1145


>gb|AF161410.1|AF161410 Homo sapiens HSPC292 mRNA, partial cds
          Length = 1206

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                            
Query: 2   gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 50
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gtgctgtccccggcataggtccatctctgcagaagccatttcaggagta 297


>ref|XM_548240.2| PREDICTED: Canis familiaris similar to transmembrane protein 49
            (LOC491120), mRNA
          Length = 2515

 Score = 83.8 bits (42), Expect = 6e-14
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                          
Query: 2    gtgctgtccccggcataggtccatctctgcagaagccatttcagga 47
            |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1574 gtgctgtccccggcataggtccatctctgcagaagccattccagga 1619

reads

chr17 chr17 57184625 57184675 50M                            AGGTTCATGGTTAGTGGTTCTCTCTG
chr17 chr17 57184635 57184685 50M                            AGGTTCATGGTTAGTGGTTCTCTCTGGAAGGAACAG
chr17 chr17 57184639 57184689 50M                            AGGTTCATGGTTAGTGGTTCTCTCTGGAAGGAACAGTCTA
chr17 chr17 57184646 57184696 50M                            AGGTTCATGGTTAGTGGTTCTCTCTGGAAGGAACAGTCTAAGGTTTG
chr17 chr17 57184649 57184699 50M                            AGGTTCATGGTTAGTGGTTCTCTCTGGAAGGAACAGTCTAAGGTTTGTAG
chr17 chr17 57184655 57184705 50M                                  ATGGTTAGTGGTTCTCTCTGGAAGGAACAGTCTAAGGTTTGTAGGACTTG
chr17 chr17 57184662 57184712 50M                                         GTGGTTCTCTCTGGAAGGAACAGTCTAAGGTTTGTAGGACTTGCGTTCCA
chr17 chr17 57184679 57184729 50M                                                          GAACAGTCTAAGGTTTGTAGGACTTGCGTTCCACCTACCAAAGCTAATCG
chr17 chr17 57184684 57184734 50M                                                               GTCTAAGGTTTGTAGGACTTGCGTTCCACCTACCAAAGCTAATCGAGTTA
chr17 chr17 57184687 57184737 50M                                                                  TAAGGTTTGTAGGACTTGCGTTCCACCTACCAAAGCTAATCGAGTTAGAA
chr17 chr17 57184690 57184740 50M                                                                     GGTTTGTAGGACTTGCGTTCCACCTACCAAAGCTAATCGAGTTAGAAGGC
chr17 chr17 57184693 57184743 50M                                                                        TTGTAGGACTTGCGTTCCACCTACCAAAGCTAATCGAGTTAGAAGGCTCC
chr17 chr17 57184697 57184747 50M                                                                            AGGACTTGCGTTCCACCTACCAAAGCTAATCGAGTTAGAAGGCTCCAAAC
chr17 chr17 57184701 57184751 50M                                                                                CTTGCGTTCCACCTACCAAAGCTAATCGAGTTAGAAGGCTCCAAACTGAG
chr17 chr17 57184716 57184766 50M                                                                                               CCAAAGCTAATCGAGTTAGAAGGCTCCAAACTGAGGTGTCATTTCTCATT
chr17 chr17 57184719 57184769 50M                                                                                                  AAGCTAATCGAGTTAGAAGGCTCCAAACTGAGGTGTCATTTCTCATTACG
chr17 chr17 57184723 57184773 50M                                                                                                      TAATCGAGTTAGAAGGCTCCAAACTGAGGTGTCATTTCTCATTACGGTGG
chr17 chr17 57184732 57184782 50M                                                                                                               TAGAAGGCTCCAAACTGAGGTGTCATTTCTCATTACGGTGGTGAGAGGAC
chr17 chr17 57184737 57184787 50M                                                                                                                    GGCTCCAAACTGAGGTGTCATTTCTCATTACGGTGGTGAGAGGACGGGCT
chr17 chr17 57184740 57184790 50M                                                                                                                       TCCAAACTGAGGTGTCATTTCTCATTACGGTGGTGAGAGGACGGGACCAC
chr17 chr17 57184744 57184794 50M                                                                                                                           AACTGAGGTGTCATTTCTCATTACGGTGGTGAGAGGACGGGACCACACAC
chr17 chr17 57184753 57184803 50M                                                                                                                                    GTCATTTCTCATTACGGTGGTGGGAGGACGGGACCACACACTGTGAAGTC
chr17 chr17 57184756 57184806 50M                                                                                                                                       ATTTCTCATTACGGTGGTGAGAGGACGGGACCACACACTGTGAAGTCTTC
chr17 chr17 57184768 57184818 50M                                                                                                                                                   GGTGGTGAGAGGACGGGACCACACACTGTGAAGTCTTCGTTCCCACATCC
chr17 chr17 57184774 57184824 50M                                                                                                                                                         GAGAGGACGGGACCACACACTGTGAAGTCTTCGTTCCCACATCCCACACT
chr17 chr17 57184778 57184828 50M                                                                                                                                                             GGACGGGACCACACACTGTGAAGTCTTCGTTCCCACATCCCACACTTCAT
chr17 chr17 57184781 57184831 50M                                                                                                                                                                CGGGACCACACACTGTGAAGTCTTCGTTCCCACATCCCACACTTCATTCT
chr17 chr17 57184784 57184834 50M                                                                                                                                                                   GACCACACACTGTGAAGTCTTCGTTCCCACATCCCACACTTCATTCTTGC
chr17 chr17 57184787 57184837 50M                                                                                                                                                                      CACACACTGTGCAGTCTTCGTTCCCACATCCCACGCTTCATTCTTGCCGC
chr17 chr17 57184793 57184843 50M                                                                                                                                                                            CTGTGAAGTCTTCGTTCCCACATCCCACACTTCATTCTTGCCGCCTAAGT
chr17 chr17 57184798 57184848 50M                                                                                                                                                                                 AAGTCTTCGTTCCCACATCCCACACTTCATTCTTGCCGCCTAAGTTGTCG
chr17 chr17 57184801 57184851 50M                                                                                                                                                                                    TCTTCGTTCCCACATCCCACACTTCATTCTTGCCGCCTAAGTTGTCGCCG
chr17 chr17 57184805 57184855 50M                                                                                                                                                                                        CGTTCCCACATCCCACACTTCATTCTTGCCGCCTAAGTTGTCGCCGTGGG
chr17 chr17 57184811 57184861 50M                                                                                                                                                                                              CACATCCCACACTTCATTCTTGCCGCCTAAGTTGTCGCCGTGGGACTATT
chr17 chr17 57184815 57184865 50M                                                                                                                                                                                                  TCCCACACTTCATTCTTGCCGCCTAAGTTGTCGCCGTGGGACTATTGAAA
chr17 chr17 57184818 57184868 50M                                                                                                                                                                                                     CACACTTCATTCTTGCCGCCTAAGTTGTCGCCGTGGGACTATTGAAAGGG
chr17 chr17 57184825 57184875 50M                                                                                                                                                                                                            CATTCTTGCCGCCTAAGTTGTCGCCGTGGGACTATTGAAAGGGTATCAGC
chr17 chr17 57184837 57184887 50M                                                                                                                                                                                                                        CTAAGTTGTCGCCGTGGGACTATTGAAAGGGTATCAGCGATATTCATCTT
chr17 chr17 57184844 57184894 50M                                                                                                                                                                                                                               GTCGCCGTGGGACTATTGAAAGGGTATCAGCGATATTCATCTTTCCTATA
chr17 chr17 57184847 57184897 50M                                                                                                                                                                                                                                  GTCGTGGGACTATTGAAAGGGTATCAGCGATATTCATCTTTCCTATAAAT
chr17 chr17 57184850 57184900 50M                                                                                                                                                                                                                                     GTGGGACTATTGAAAGGGTATCAGCGATATTCATCTTTCCTATAAATGGG
chr17 chr17 57184853 57184903 50M                                                                                                                                                                                                                                        GGACTATTGAAAGGGTATCAGCGATATTCATCTTTCCTATAAATGGGATC
chr17 chr17 57184858 57184908 50M                                                                                                                                                                                                                                             ATTGAAAGGGTATCAGCGATATTCATCTTTCCTATAAATGGGATCTGCTT
chr17 chr17 57184861 57184911 50M                                                                                                                                                                                                                                                GAAAGGGTATCAGCGATATTCATCTTTCCTATAAATGGGATCTGCTTTCT
chr17 chr17 57184864 57184914 50M                                                                                                                                                                                                                                                   AGGGTATCAGCGATATTCATCTTTCCTATAAATGGGATCTGCTTTCTACA
chr17 chr17 57184871 57184921 50M                                                                                                                                                                                                                                                          CAGCGATATTCATCTTTCCTATAAATGGGATCTGCTTTCTACAGTTTCCT
chr17 chr17 57184881 57184931 50M                                                                                                                                                                                                                                                                    CATCTTTCCTATAAATGGGATCTGCTTTCTACAGTTTCCTGCCAGATGTG
chr17 chr17 57184892 57184942 50M                                                                                                                                                                                                                                                                               TAAATGGGATCTGCTTTCTACAGTTTCCTGCCAGATGTGTAAAGATTGCA
chr17 chr17 57184895 57184945 50M                                                                                                                                                                                                                                                                                  ATGGGATCTGCTTTCTACAGTTTCCTGCCAGATGTGTAAAGATTGCAAGA
chr17 chr17 57184904 57184954 50M                                                                                                                                                                                                                                                                                           GCTTTCTACAGTTTCCTGCCAGATGTGTAAAGATTGCAAGAATTGAAGGT
chr17 chr17 57184913 57915666 37M57915654F13M                                                                                                                                                                                                                                                                                        AGTTTCCTGCCAGATGTGTAAAGATTGCAAGAATTGA AGTGCTGTCCCCG
chr17 chr17 57184921 57915674 29M57915654F21M                                                                                                                                                                                                                                                                                                GCCAGATGTGTAAAGATTGCAAGAATTGA AGTGCTGTCCCCGGCATAGGT
chr17 chr17 57184930 57915683 20M57915654F30M                                                                                                                                                                                                                                                                                                         GTAAAGATTGCAAGAATTGA AGTGCTGTCCCCGGCATAGGTCCATCTCTG
chr17 chr17 57184933 57915686 17M57915654F33M                                                                                                                                                                                                                                                                                                            AAGATTGCAAGAATTGA AGTGCTGTCCCCGGCATAGGTCCATCTCTGCAG
chr17 chr17 57184936 57915689 14M57915654F36M                                                                                                                                                                                                                                                                                                               ATTGCAAGAATTGA AGTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAG
chr17 chr17 57915654 57915704 50M                                                                                                                                                                                                                                                                                                                                           GTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTAC
chr17 chr17 57915659 57915709 50M                                                                                                                                                                                                                                                                                                                                                GTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGA
chr17 chr17 57915662 57915712 50M                                                                                                                                                                                                                                                                                                                                                   CCCGCCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGC
chr17 chr17 57915668 57915718 50M                                                                                                                                                                                                                                                                                                                                                         ATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACG
chr17 chr17 57915671 57915721 50M                                                                                                                                                                                                                                                                                                                                                            GGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCA
chr17 chr17 57915675 57915725 50M                                                                                                                                                                                                                                                                                                                                                                CATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCATACG
chr17 chr17 57915678 57915728 50M                                                                                                                                                                                                                                                                                                                                                                   CTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTT
chr17 chr17 57915681 57915731 50M                                                                                                                                                                                                                                                                                                                                                                      TGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCAC
chr17 chr17 57915684 57915734 50M                                                                                                                                                                                                                                                                                                                                                                         AGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCAC
chr17 chr17 57915687 57915737 50M                                                                                                                                                                                                                                                                                                                                                                            AGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAA
chr17 chr17 57915690 57915740 50M                                                                                                                                                                                                                                                                                                                                                                               CATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGC
chr17 chr17 57915693 57915743 50M                                                                                                                                                                                                                                                                                                                                                                                  TTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAA
chr17 chr17 57915696 57915746 50M                                                                                                                                                                                                                                                                                                                                                                                     AGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATG
chr17 chr17 57915699 57915749 50M                                                                                                                                                                                                                                                                                                                                                                                        AGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGTGAAATGGGC
chr17 chr17 57915702 57915752 50M                                                                                                                                                                                                                                                                                                                                                                                           ACCTGGCGTCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACA
chr17 chr17 57915705 57915755 50M                                                                                                                                                                                                                                                                                                                                                                                              TGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCA
chr17 chr17 57915708 57915758 50M                                                                                                                                                                                                                                                                                                                                                                                                 AGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAG
chr17 chr17 57915711 57915761 50M                                                                                                                                                                                                                                                                                                                                                                                                    CTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGGA
chr17 chr17 57915714 57915764 50M                                                                                                                                                                                                                                                                                                                                                                                                       AACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGTAAGA
chr17 chr17 57915718 57915768 50M                                                                                                                                                                                                                                                                                                                                                                                                           GCAGAAGCTTCACCACAAAAACGAAATGGGCACACCACAGGTAAGACTTT
chr17 chr17 57915721 57917141 37M1370N13M                                                                                                                                                                                                                                                                                                                                                                                                      GAAGCTTCACCACAAAAGCGAAATGGGCACACCACAG|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
chr17 chr17 57915724 57917144 34M1370N16M                                                                                                                                                                                                                                                                                                                                                                                                         GCTTCACCACAAAAGCGAAATGGGCACACCACAG|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
chr17 chr17 57915727 57917147 31M1370N19M                                                                                                                                                                                                                                                                                                                                                                                                            TCACCACAAAAGCGAAATGGGCACACCACAG|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
chr17 chr17 57915730 57917150 28M1370N22M                                                                                                                                                                                                                                                                                                                                                                                                               CCACAAAAGCGAAATGGGCACACCACAG|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
chr17 chr17 57915733 57917153 25M1370N25M                                                                                                                                                                                                                                                                                                                                                                                                                  CAAAAGCGAAATGGGCACACCACAG|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
chr17 chr17 57915737 57917158 21M1370N24M1D5M                                                                                                                                                                                                                                                                                                                                                                                                                  AGCGAAATGGGCACACCACAG|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
chr17 chr17 57915741 57917161 17M1370N33M                                                                                                                                                                                                                                                                                                                                                                                                                          AAATGGGCACACCACAG|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
chr17 chr17 57915744 57917164 14M1370N36M                                                                                                                                                                                                                                                                                                                                                                                                                             TGGGCACACCACAG|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
chr17 chr17 57915747 57917167 11M1370N39M                                                                                                                                                                                                                                                                                                                                                                                                                                GCACACCACAG|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
chr17 chr17 57915752 57915802 50M                                                                                                                                                                                                                                                                                                                                                                                                                                             CCACAGGTAAGACTTTAATCCGGTTTCTTCTCCCCTCTGGGAAGTTTCGG
chr17 chr17 57915770 57915820 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                               TCCGGTTTCTTCTCCCCTCTGGGAAGTTTCGGGCTGAAATTACATTCACA
chr17 chr17 57915776 57915826 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTCTTCTCCCCTCTGGGAAGTTTCGGGCTGAAATTACATTCACAGCTCTC
chr17 chr17 57915781 57915831 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CTCCCCTCTGGGAAGTTTCGGGCTGAAATTACATTCACAGCTCTCACTCA
chr17 chr17 57915790 57915840 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGGAAGTTTCGGGCTGAAATTACATTCACAGCTCTCACTCACATTTTTAG
chr17 chr17 57915842 57915892 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AAATAAGTGAAGTTGGTTTGCCAGTGTTCCTTGACAGAAGTTGAGCGTCT
chr17 chr17 57915859 57915909 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TTGCCAGTGTTCCTTGACAGAAGTTGAGCGTCTGTGTATGCTCTACTGGG
chr17 chr17 57915865 57915915 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GTGTTCCTTGACAGAAGTTGAGCGTCTGTGTATGCTCTACTGGGAAATTT
chr17 chr17 57915876 57915926 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CAGAAGTTGAGCGTCTGTGTATGCTCTACTGGGAAATTTGTCTTTGTCTT
chr17 chr17 57915899 57915949 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CTCTACTGGGAAATTTGTCTTTGTCTTAGACTAGAAAGTGTAACTTCTGT
chr17 chr17 57915908 57915958 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GAAATTTGTCTTTGTCTTAGACTAGAAAGTGTAACTTCTGTAC
chr17 chr17 57915929 57915979 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CTAGAAAGTGTAACTTCTGTAC
chr17 chr17 57915942 57915992 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTTCTGTAC

3 pairs

26:22
4:48
38:31

MCF7 chr17-chr17 57992061 57917126 ff

4 2 1 7 33 28
AGTAACAGGAGCAAATACTGGGAAAATATTTGCCATGAAGGTGCTTAAAA AGGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATG
00000000000000000111113333334444444444444444444444 44444444444444444333331111110000000000000000000000
RPS6KB1 exon4(57991994-57992063) TMEM49 exon12(57917127-57917951)

blast search - human genome

left

>ref|NC_000017.10| Homo sapiens chromosome 17, GRCh37.p2 primary reference assembly
          Length = 81195210

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57992013 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 57992062


>ref|AC_000149.1| Homo sapiens chromosome 17, alternate assembly HuRef, whole genome shotgun
                sequence
          Length = 76567021

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53364442 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 53364491


>ref|AC_000060.1| Homo sapiens chromosome 17, alternate assembly Hs_Celera, whole genome
                shotgun sequence
          Length = 77819263

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54455522 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 54455571

right

>ref|NC_000017.10| Homo sapiens chromosome 17, GRCh37.p2 primary reference assembly
          Length = 81195210

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57917127 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 57917176


>ref|AC_000149.1| Homo sapiens chromosome 17, alternate assembly HuRef, whole genome shotgun
                sequence
          Length = 76567021

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53289616 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 53289665


>ref|AC_000060.1| Homo sapiens chromosome 17, alternate assembly Hs_Celera, whole genome
                shotgun sequence
          Length = 77819263

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1        agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54380640 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 54380689

blast search - nt

left

>ref|XM_002923313.1| PREDICTED: Ailuropoda melanoleuca ribosomal protein S6 kinase,
           70kDa, polypeptide 1 (RPS6KB1), mRNA
          Length = 1798

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 421


>ref|XM_002834114.1| PREDICTED: Pongo abelii ribosomal protein S6 kinase, 70kDa,
           polypeptide 1, transcript variant 4 (RPS6KB1), mRNA
          Length = 5426

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 452


>ref|XM_002834113.1| PREDICTED: Pongo abelii ribosomal protein S6 kinase, 70kDa,
           polypeptide 1, transcript variant 3 (RPS6KB1), mRNA
          Length = 4463

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 518


>ref|XM_002834111.1| PREDICTED: Pongo abelii ribosomal protein S6 kinase, 70kDa,
           polypeptide 1, transcript variant 1 (RPS6KB1), mRNA
          Length = 5492

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 518


>ref|XM_001109701.2| PREDICTED: Macaca mulatta ribosomal protein S6 kinase, 70kDa,
           polypeptide 1 (RPS6KB1), mRNA
          Length = 2284

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 518


>ref|XM_002748180.1| PREDICTED: Callithrix jacchus ribosomal protein S6 kinase, 70kDa,
           polypeptide 1, transcript variant 3 (RPS6KB1), mRNA
          Length = 2595

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 454


>ref|XM_002748178.1| PREDICTED: Callithrix jacchus ribosomal protein S6 kinase, 70kDa,
           polypeptide 1, transcript variant 1 (RPS6KB1), mRNA
          Length = 2659

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 518


>dbj|AK297147.1| Homo sapiens cDNA FLJ53847 complete cds, highly similar to
           Ribosomal protein S6 kinase beta-1 (EC 2.7.11.1)
          Length = 2046

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 454


>dbj|AK293247.1| Homo sapiens cDNA FLJ54786 complete cds, highly similar to
           Ribosomal protein S6 kinase beta-1 (EC 2.7.11.1)
          Length = 1964

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 466


>emb|CU690966.1| Synthetic construct Homo sapiens gateway clone IMAGE:100021802 5'
           read RPS6KB1 mRNA
          Length = 1217

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 395


>dbj|AB384946.1| Synthetic construct DNA, clone: pF1KB4421, Homo sapiens RPS6KB1
           gene for ribosomal protein S6 kinase beta-1, complete
           cds, without stop codon, in Flexi system
          Length = 1592

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 388


>dbj|AK312875.1| Homo sapiens cDNA, FLJ93319, highly similar to Homo sapiens
           ribosomal protein S6 kinase, 70kDa, polypeptide
           1(RPS6KB1), mRNA
          Length = 1623

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 424


>ref|XM_001503753.1| PREDICTED: Equus caballus ribosomal protein S6 kinase, 70kDa,
           polypeptide 1 (RPS6KB1), mRNA
          Length = 5317

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 482


>ref|XR_030192.1| PREDICTED: Monodelphis domestica similar to G3 serine/threonine
           kinase (LOC100011566), mRNA
          Length = 2111

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 400


>ref|XM_001362395.1| PREDICTED: Monodelphis domestica similar to G3 serine/threonine
           kinase (LOC100010269), mRNA
          Length = 2087

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 379


>ref|XR_030394.1| PREDICTED: Monodelphis domestica hypothetical protein LOC100023530
           (LOC100023530), mRNA
          Length = 2231

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 552


>dbj|AB170947.1| Macaca fascicularis brain cDNA clone: QorA-11344, similar to human
           ribosomal protein S6 kinase, 70kDa, polypeptide
           1(RPS6KB1), mRNA, RefSeq: NM_003161.1
          Length = 1837

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 441


>gb|AC004686.2| Homo sapiens chromosome 17, clone RP5-1073F15, complete sequence
          Length = 133477

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                               
Query: 1     agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
             ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40618 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 40569


>ref|XM_523815.2| PREDICTED: Pan troglodytes similar to p70 ribosomal S6 kinase
           alpha-I, transcript variant 3 (LOC468426), mRNA
          Length = 1526

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 518


>ref|XM_001138941.1| PREDICTED: Pan troglodytes similar to p70 ribosomal S6 kinase
           alpha-I, transcript variant 1 (LOC468426), mRNA
          Length = 4463

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 518


>ref|XM_001139182.1| PREDICTED: Pan troglodytes similar to p70 ribosomal S6 kinase
           alpha-I, transcript variant 2 (LOC468426), mRNA
          Length = 5501

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 518


>gb|AC183963.2| Pan troglodytes BAC clone CH251-562F21 from chromosome 17, complete
              sequence
          Length = 213058

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                
Query: 1      agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
              ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150615 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 150566


>gb|BC053365.1| Homo sapiens ribosomal protein S6 kinase, 70kDa, polypeptide 1,
           mRNA (cDNA clone MGC:61512 IMAGE:6142009), complete cds
          Length = 1998

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 420


>ref|NM_003161.2| Homo sapiens ribosomal protein S6 kinase, 70kDa, polypeptide 1
           (RPS6KB1), mRNA
          Length = 5332

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 482


>ref|XM_862272.1| PREDICTED: Canis familiaris similar to ribosomal protein S6 kinase,
           70kDa, polypeptide 1, transcript variant 5 (LOC480580),
           mRNA
          Length = 2631

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 511


>ref|XM_862260.1| PREDICTED: Canis familiaris similar to ribosomal protein S6 kinase,
           70kDa, polypeptide 1, transcript variant 4 (LOC480580),
           mRNA
          Length = 2781

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 511


>ref|XM_862249.1| PREDICTED: Canis familiaris similar to ribosomal protein S6 kinase,
           70kDa, polypeptide 1, transcript variant 3 (LOC480580),
           mRNA
          Length = 2294

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 511


>ref|XM_862237.1| PREDICTED: Canis familiaris similar to ribosomal protein S6 kinase,
           70kDa, polypeptide 1, transcript variant 2 (LOC480580),
           mRNA
          Length = 610

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 476


>ref|XM_537702.2| PREDICTED: Canis familiaris similar to ribosomal protein S6 kinase,
           70kDa, polypeptide 1, transcript variant 1 (LOC480580),
           mRNA
          Length = 5295

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 511


>gb|BC036033.1| Homo sapiens ribosomal protein S6 kinase, 70kDa, polypeptide 1,
           mRNA (cDNA clone IMAGE:5271809), complete cds
          Length = 2832

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 478


>dbj|AB169554.1| Macaca fascicularis brain cDNA, clone: QflA-12580, similar to human
           ribosomal protein S6 kinase, 70kDa, polypeptide
           1(RPS6KB1), mRNA, RefSeq: NM_003161.1
          Length = 1832

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 441


>gb|AY335785.1| Synthetic construct Homo sapiens ribosomal protein S6 kinase,
           70kDa, polypeptide 1 (RPS6KB1) mRNA, partial cds
          Length = 1578

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 379


>gb|M60725.1|HUMP70S6KB Human p70 ribosomal S6 kinase alpha-II mRNA, complete cds
          Length = 1791

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 408


>gb|M60724.1|HUMP70S6KA Human p70 ribosomal S6 kinase alpha-I mRNA, complete cds
          Length = 2346

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 406


>ref|XM_003131672.1| PREDICTED: Sus scrofa ribosomal protein S6 kinase, 70kDa,
           polypeptide 1, transcript variant 2 (RPS6KB1), mRNA
          Length = 4134

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 417 agtaacaggagcaaataccgggaaaatatttgccatgaaggtgcttaaaa 466


>ref|XM_003131671.1| PREDICTED: Sus scrofa ribosomal protein S6 kinase, 70kDa,
           polypeptide 1, transcript variant 1 (RPS6KB1), mRNA
          Length = 4116

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 399 agtaacaggagcaaataccgggaaaatatttgccatgaaggtgcttaaaa 448


>gb|GU144017.1| Capra hircus S6 kinase polypeptide 1 (S6K1) mRNA, complete cds
          Length = 2272

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 330 agtaacaggagcaaataccgggaaaatatttgccatgaaggtgcttaaaa 379


>ref|XM_001509800.1| PREDICTED: Ornithorhynchus anatinus similar to G3 serine/threonine
           kinase (LOC100078852), mRNA
          Length = 1449

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaacaggagctaatactgggaaaatatttgccatgaaggtgcttaaaa 250


>ref|NM_205816.1| Bos taurus ribosomal protein S6 kinase, 70kDa, polypeptide 1
           (RPS6KB1), mRNA
 gb|AY396564.1| Bos taurus p70S6K mRNA, complete cds
          Length = 1585

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 330 agtaacaggagcaaataccgggaaaatatttgccatgaaggtgcttaaaa 379


>ref|NM_001101690.1| Oryctolagus cuniculus ribosomal protein S6 kinase, 70kDa,
           polypeptide 1 (RPS6KB1), mRNA
 emb|X54415.1| Rabbit mRNA for serine/threonine kinase homologous to ribosomal
           protein S6 kinase
          Length = 1778

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                             
Query: 1   agtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaa 50
           ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 357 agtaacaggagcaaatactgggaaaatatttgctatgaaggtgcttaaaa 406

right

>ref|NM_030938.3| Homo sapiens transmembrane protein 49 (TMEM49), mRNA
          Length = 2197

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1349 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 1398


>dbj|AB047551.1| Homo sapiens mRNA, novel lipopolysaccharide-inducible gene, complete
            cds
          Length = 1221

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 1125


>gb|DQ892569.2| Synthetic construct clone IMAGE:100005199; FLH187623.01X;
            RZPDo839B05150D transmembrane protein 49 (TMEM49) gene,
            encodes complete protein
          Length = 1261

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1098 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 1147


>emb|AM393627.1| Synthetic construct Homo sapiens clone IMAGE:100001781 for
            hypothetical protein (TMEM49 gene)
          Length = 1260

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 1145


>emb|AM393551.1| Synthetic construct Homo sapiens clone IMAGE:100001787 for
            hypothetical protein (TMEM49 gene)
          Length = 1260

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 1145


>gb|AC004686.2| Homo sapiens chromosome 17, clone RP5-1073F15, complete sequence
          Length = 133477

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                
Query: 1      agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
              ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115504 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 115455


>gb|AY699265.1| Homo sapiens microRNA pri-miR-21, complete sequence
          Length = 3463

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 994


>gb|AF214006.1|AF214006 Homo sapiens TDC1 (TDC1) mRNA, complete cds
          Length = 2530

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1189 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 1238


>ref|NM_001132442.1| Pongo abelii transmembrane protein 49 (TMEM49), mRNA
 emb|CR859383.1| Pongo abelii mRNA; cDNA DKFZp459F2029 (from clone DKFZp459F2029)
          Length = 2630

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1211 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 1260


>emb|CR623568.1| full-length cDNA clone CS0DA002YF12 of Neuroblastoma of Homo sapiens
            (human)
          Length = 1978

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1171 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 1220


>emb|CR608437.1| full-length cDNA clone CS0DN002YI16 of Adult brain of Homo sapiens
            (human)
          Length = 1973

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1183 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 1232


>emb|CR597083.1| full-length cDNA clone CS0DA003YA18 of Neuroblastoma of Homo sapiens
            (human)
          Length = 1984

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1194 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 1243


>emb|CR533521.1| Homo sapiens full open reading frame cDNA clone RZPDo834B1219D for
            gene VMP1, likely ortholog of rat vacuole membrane
            protein 1; complete cds, incl. stopcodon
          Length = 1301

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 1125


>gb|BC009758.2| Homo sapiens transmembrane protein 49, mRNA (cDNA clone MGC:11204
            IMAGE:3927937), complete cds
          Length = 1800

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1200 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 1249


>gb|BC053563.1| Homo sapiens microRNA 21, mRNA (cDNA clone IMAGE:6190064)
          Length = 3404

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 950


>emb|AL136711.1| Homo sapiens mRNA; cDNA DKFZp566I133 (from clone DKFZp566I133)
          Length = 2052

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 1258


>dbj|AK025987.1| Homo sapiens cDNA: FLJ22334 fis, clone HRC05837, highly similar to
            AF161410 Homo sapiens HSPC292 mRNA
          Length = 1929

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 1137


>dbj|AK024969.1| Homo sapiens cDNA: FLJ21316 fis, clone COL02253, highly similar to
            AF161410 Homo sapiens HSPC292 mRNA
          Length = 2047

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1199 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 1248


>gb|AF161410.1|AF161410 Homo sapiens HSPC292 mRNA, partial cds
          Length = 1206

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 1   agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 400


>ref|NM_001190897.1| Macaca mulatta transmembrane protein 49 (TMEM49), mRNA
          Length = 1437

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 46/46 (100%)
 Strand = Plus / Plus

                                                          
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgt 46
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1124 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgt 1169


>dbj|AB171376.1| Macaca fascicularis brain cDNA clone: QorA-21631, similar to human
            likely ortholog of rat vacuole membrane protein 1(VMP1),
            mRNA, RefSeq: NM_030938.2
          Length = 2016

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 46/46 (100%)
 Strand = Plus / Plus

                                                          
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgt 46
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1180 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgt 1225


>dbj|AB170352.1| Macaca fascicularis brain cDNA clone: QmoA-10458, similar to human
            likely ortholog of rat vacuole membrane protein 1(VMP1),
            mRNA, RefSeq: NM_030938.2
          Length = 1277

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 46/46 (100%)
 Strand = Plus / Plus

                                                          
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgt 46
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1162 agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgt 1207


>ref|XM_001137010.1| PREDICTED: Pan troglodytes transmembrane protein 49, transcript
            variant 6 (TMEM49), mRNA
          Length = 6133

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                              
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
            |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3532 agggagaaaactggttgtcctggatgtttgaaaagttggttgttgtcatg 3581


>ref|XM_001136208.1| PREDICTED: Pan troglodytes transmembrane protein 49, transcript
            variant 1 (TMEM49), mRNA
          Length = 4661

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                              
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
            |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2060 agggagaaaactggttgtcctggatgtttgaaaagttggttgttgtcatg 2109


>ref|XM_001136866.1| PREDICTED: Pan troglodytes transmembrane protein 49, transcript
            variant 4 (TMEM49), mRNA
          Length = 4691

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                              
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
            |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2090 agggagaaaactggttgtcctggatgtttgaaaagttggttgttgtcatg 2139


>ref|XM_511922.2| PREDICTED: Pan troglodytes transmembrane protein 49, transcript
            variant 7 (TMEM49), mRNA
          Length = 4772

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                              
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
            |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2171 agggagaaaactggttgtcctggatgtttgaaaagttggttgttgtcatg 2220


>ref|XM_001136792.1| PREDICTED: Pan troglodytes transmembrane protein 49, transcript
            variant 3 (TMEM49), mRNA
          Length = 4098

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                              
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
            |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1497 agggagaaaactggttgtcctggatgtttgaaaagttggttgttgtcatg 1546


>ref|XM_001136704.1| PREDICTED: Pan troglodytes transmembrane protein 49, transcript
            variant 2 (TMEM49), mRNA
          Length = 3741

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                              
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
            |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1140 agggagaaaactggttgtcctggatgtttgaaaagttggttgttgtcatg 1189


>ref|XM_001136943.1| PREDICTED: Pan troglodytes transmembrane protein 49, transcript
            variant 5 (TMEM49), mRNA
          Length = 4811

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                              
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
            |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2210 agggagaaaactggttgtcctggatgtttgaaaagttggttgttgtcatg 2259


>ref|XM_002923315.1| PREDICTED: Ailuropoda melanoleuca transmembrane protein 49-like
            (LOC100463839), mRNA
          Length = 1670

 Score = 83.8 bits (42), Expect = 6e-14
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                          
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgt 46
            ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1176 agggagaaaactggttgtcctggatgtttgagaagttggtcgttgt 1221


>ref|XM_002719255.1| PREDICTED: Oryctolagus cuniculus transmembrane protein 49
            (LOC100351532), mRNA
          Length = 1454

 Score = 83.8 bits (42), Expect = 6e-14
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                          
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgt 46
            ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1076 agggagaaaactggttgtcctggatgtttgagaagttggtcgttgt 1121


>ref|XM_548240.2| PREDICTED: Canis familiaris similar to transmembrane protein 49
            (LOC491120), mRNA
          Length = 2515

 Score = 83.8 bits (42), Expect = 6e-14
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                          
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgt 46
            ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1676 agggagaaaactggttgtcctggatgtttgagaagttggtcgttgt 1721


>ref|XM_001362566.1| PREDICTED: Monodelphis domestica hypothetical protein LOC100010353
            (LOC100010353), mRNA
          Length = 1278

 Score = 75.8 bits (38), Expect = 2e-11
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                              
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgtcatg 50
            |||| |||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 1076 agggggaaaactggttgtcctggatgtttgaaaagttagtcattgtcatg 1125


>ref|NM_001075368.1| Bos taurus transmembrane protein 49 (TMEM49), mRNA
 gb|BC120116.1| Bos taurus transmembrane protein 49, mRNA (cDNA clone MGC:140672
            IMAGE:8273068), complete cds
          Length = 2067

 Score = 75.8 bits (38), Expect = 2e-11
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                          
Query: 1    agggagaaaactggttgtcctggatgtttgaaaagttggtcgttgt 46
            ||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 1181 agggagaaaactggttgtcctggatgtttgagaagttggttgttgt 1226

reads

chr17 chr17 57990121 57992001 44M1830N6M                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||GTTTTT
chr17 chr17 57990125 57992005 40M1830N10M                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||GTTTTTCAAG
chr17 chr17 57990128 57992008 37M1830N13M                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||GTTTTTCAAGTAC
chr17 chr17 57990135 57992015 30M1830N20M                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||GTTTTTCAAGTACGAAAAGT
chr17 chr17 57990139 57992019 26M1830N24M                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||GTTTTTCAAGTACGAAAAGTAACA
chr17 chr17 57990142 57992022 23M1830N27M                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||GTTTTTCAAGTACGAAAAGTAACAGGA
chr17 chr17 57990145 57992025 20M1830N30M                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||GTTTTTCAAGTACGAAAAGTAACAGGAGCA
chr17 chr17 57990148 57992028 17M1830N33M                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||GTTTTTCAAGTACGAAAAGTAACAGGAGCAAAT
chr17 chr17 57990151 57992031 14M1830N36M                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||GTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACT
chr17 chr17 57990154 57992034 11M1830N39M                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||GTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGG
chr17 chr17 57990159 57992039 6M1830N44M                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||GTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAAAAT
chr17 chr17 57991783 57991833 50M                                                  TAGATGGTCATTGTCCAACATTACCACCAGATGGCAGCAGAACAAACAGG
chr17 chr17 57991892 57991942 50M                                                                                                                                                               TATAATATAAACTGCTGTGGCATATGTTTCTTATAACTAGGAATTAAGGG
chr17 chr17 57991991 57992041 50M                                                                                                                                                                                                                                                                  AAAGGTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAAAATAT
chr17 chr17 57991994 57992044 50M                                                                                                                                                                                                                                                                     GGTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAAAATATTTG
chr17 chr17 57991997 57992047 50M                                                                                                                                                                                                                                                                        TTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAAAATATTTGCCA
chr17 chr17 57992002 57992052 50M                                                                                                                                                                                                                                                                             AAGTACGAAAAGTAACAGGAGCAAGTACTGGGAAAATATTTGCCATGAAG
chr17 chr17 57992005 57992055 50M                                                                                                                                                                                                                                                                                TACGAAAAGTAACAGGAGCAAATACTGGGAAAATATTTGCCATGAAGGTG
chr17 chr17 57992008 57992058 50M                                                                                                                                                                                                                                                                                   GAAAAGTAACAGGAGCAAATACTGGGAAAATATTTGCCATGAAGGTGCTG
chr17 chr17 57992016 57992066 50M                                                                                                                                                                                                                                                                                           ACAGGAGCAAATACTGGGAAAATATTTGCCATGAAGGTGCTTAAAAAGGC
chr17 chr17 57992019 57992069 50M                                                                                                                                                                                                                                                                                              GGAGCAAATACTGGGAAAATATTTGCCATGAAGGTGCTTAAAAAGGCAAT
chr17 chr17 57992022 57917136 40M57917127F10M                                                                                                                                                                                                                                                                                     GCAAATACTGGGAAAATATTTGCCATGAAGGTGCTTAAAA AGGGAGAAAA
chr17 chr17 57992029 57917143 33M57917127F17M                                                                                                                                                                                                                                                                                            CTGGGAAAATATTTGCCATGAAGGTGCTTAAAA AGGGAGAAAACTGGTTG
chr17 chr17 57992034 57917148 28M57917127F22M                                                                                                                                                                                                                                                                                                 AAAATATTTGCCATGAAGGTGCTTAAAA AGGGAGAAAACTGGTTGTCCTG
chr17 chr17 57992034 57917148 28M57917127F22M                                                                                                                                                                                                                                                                                                 AAAATATTTGCCATGAAGGTGCTTAAAA AGGGAGAAAACTGGTTGTCCTG
chr17 chr17 57992040 57917154 22M57917127F28M                                                                                                                                                                                                                                                                                                       TTTGCCATGAAGGTGCTTAAAA AGGGAGAAAACTGGTTGTCCTGGATGTT
chr17 chr17 57992054 57917168 8M57917127F42M                                                                                                                                                                                                                                                                                                                      GCTTAAAA AGGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCG
chr17 chr17 57917117 57917168 35M1D15M                                                                                                                                                                                                                                                                                                                            TATTTCTACAGGGAGAAAACTGGTTGTCCTGGATGDTTGAAAAGTTGGTCG
chr17 chr17 57917122 57917172 50M                                                                                                                                                                                                                                                                                                                                      CCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGT
chr17 chr17 57917125 57917175 50M                                                                                                                                                                                                                                                                                                                                         CAGGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCAT
chr17 chr17 57917128 57917178 50M                                                                                                                                                                                                                                                                                                                                            GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGT
chr17 chr17 57917131 57917181 50M                                                                                                                                                                                                                                                                                                                                               GAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTG
chr17 chr17 57917134 57917184 50M                                                                                                                                                                                                                                                                                                                                                  AACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTA
chr17 chr17 57917137 57917187 50M                                                                                                                                                                                                                                                                                                                                                     TGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTT
chr17 chr17 57917140 57917190 50M                                                                                                                                                                                                                                                                                                                                                        TTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCAT
chr17 chr17 57917144 57917194 50M                                                                                                                                                                                                                                                                                                                                                            CCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTA
chr17 chr17 57917147 57917197 50M                                                                                                                                                                                                                                                                                                                                                               GGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCT
chr17 chr17 57917151 57917201 50M                                                                                                                                                                                                                                                                                                                                                                   GTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCA
chr17 chr17 57917154 57917204 50M                                                                                                                                                                                                                                                                                                                                                                      TGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTA
chr17 chr17 57917158 57917208 50M                                                                                                                                                                                                                                                                                                                                                                          AAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTC
chr17 chr17 57917161 57917211 50M                                                                                                                                                                                                                                                                                                                                                                             TTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCAT
chr17 chr17 57917164 57917214 50M                                                                                                                                                                                                                                                                                                                                                                                GTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGC
chr17 chr17 57917168 57917218 50M                                                                                                                                                                                                                                                                                                                                                                                    TTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAA
chr17 chr17 57917173 57917223 50M                                                                                                                                                                                                                                                                                                                                                                                         ATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTA
chr17 chr17 57917176 57917226 50M                                                                                                                                                                                                                                                                                                                                                                                            GTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGC
chr17 chr17 57917179 57917229 50M                                                                                                                                                                                                                                                                                                                                                                                               TGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAA
chr17 chr17 57917183 57917233 50M                                                                                                                                                                                                                                                                                                                                                                                                   ACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGA
chr17 chr17 57917187 57917237 50M                                                                                                                                                                                                                                                                                                                                                                                                       CATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCC
chr17 chr17 57917190 57917240 50M                                                                                                                                                                                                                                                                                                                                                                                                          CCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGC
chr17 chr17 57917194 57917244 50M                                                                                                                                                                                                                                                                                                                                                                                                              TCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCG
chr17 chr17 57917197 57917247 50M                                                                                                                                                                                                                                                                                                                                                                                                                 ATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTT
chr17 chr17 57917200 57917250 50M                                                                                                                                                                                                                                                                                                                                                                                                                    ATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAA
chr17 chr17 57917203 57917253 50M                                                                                                                                                                                                                                                                                                                                                                                                                       AACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTC
chr17 chr17 57917206 57917256 50M                                                                                                                                                                                                                                                                                                                                                                                                                          TCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGA
chr17 chr17 57917209 57917259 50M                                                                                                                                                                                                                                                                                                                                                                                                                             ATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGA
chr17 chr17 57917212 57917262 50M                                                                                                                                                                                                                                                                                                                                                                                                                                GCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAG
chr17 chr17 57917215 57917265 50M                                                                                                                                                                                                                                                                                                                                                                                                                                   CAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAAC
chr17 chr17 57917218 57917268 50M                                                                                                                                                                                                                                                                                                                                                                                                                                      AGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAA
chr17 chr17 57917223 57917273 50M                                                                                                                                                                                                                                                                                                                                                                                                                                           TGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAG
chr17 chr17 57917227 57917277 50M                                                                                                                                                                                                                                                                                                                                                                                                                                               AAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGA
chr17 chr17 57917230 57917280 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                  CGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAA
chr17 chr17 57917236 57917286 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                        CAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTT
chr17 chr17 57917239 57917289 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAA
chr17 chr17 57917243 57917293 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                               GGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGC
chr17 chr17 57917251 57917301 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAGATCG
chr17 chr17 57917254 57917304 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAG
chr17 chr17 57917257 57917307 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGG
chr17 chr17 57917261 57917311 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AAACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGGATGG
chr17 chr17 57917264 57917314 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGGATGGGGG
chr17 chr17 57917269 57917319 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGGATGGGTTCTGCC
chr17 chr17 57917277 57917327 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GAAAGTTTTAAACTGCAGAAATTGGAGTGGATGGGTTCTGCCTTAAATTG
chr17 chr17 57917280 57917330 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGTTTTAAACTGCAGAAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGA
chr17 chr17 57917284 57917334 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TTAAACTGCAGAAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGAC
chr17 chr17 57917291 57917341 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCAGAAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCCAAGC
chr17 chr17 57917294 57917344 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GAAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCCAAGCTGG
chr17 chr17 57917297 57917347 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATTGGAGTGGATGGGTTCTGCCTTACATTGGGAGGACTCCACGCCGGGAA

2 pairs

34:85
1942:15

MCF7 chr2-chr5 70329650 1799907 rf

5 14 1 0 35 23
TATAAAAAGAGTTGCCATGTTGTGGTGAATCCGGCCGCGCGCTCTCACCC GGCCGCACGCTCTCACCCGGCGCCGACCCCTGCGTCTGCGCACTGGCACG
00000000000000011223334555555555555555555555555555 55555555555555544332221000000000000000000000000000
ENSG00000226505 intron3(70322191-70329920) MRPL36 exon2(1799904-1799955)

blast search - human genome

left

>ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 primary reference assembly
          Length = 243199373

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                  
Query: 1        tataaaaagagttgccatgttgtggtgaatccggccgcgcgctctcaccc 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70329700 tataaaaagagttgccatgttgtggtgaatccggccgcgcgctctcaccc 70329651


>ref|AC_000134.1| Homo sapiens chromosome 2, alternate assembly HuRef, whole genome shotgun
                sequence
          Length = 234808360

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                  
Query: 1        tataaaaagagttgccatgttgtggtgaatccggccgcgcgctctcaccc 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70066074 tataaaaagagttgccatgttgtggtgaatccggccgcgcgctctcaccc 70066025


>ref|AC_000045.1| Homo sapiens chromosome 2, alternate assembly Hs_Celera, whole genome shotgun
                sequence
          Length = 236827137

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                  
Query: 1        tataaaaagagttgccatgttgtggtgaatccggccgcgcgctctcaccc 50
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70180473 tataaaaagagttgccatgttgtggtgaatccggccgcgcgctctcaccc 70180424

right

>ref|NC_000005.9| Homo sapiens chromosome 5, GRCh37.p2 primary reference assembly
          Length = 180915260

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                 
Query: 1       ggccgcacgctctcacccggcgccgacccctgcgtctgcgcactggcacg 50
               ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1799908 ggccgcacgctctcacccggcgccgacccctgcgtctgcgcactggcacg 1799957


>ref|AC_000137.1| Homo sapiens chromosome 5, alternate assembly HuRef, whole genome shotgun
               sequence
          Length = 175444460

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                 
Query: 1       ggccgcacgctctcacccggcgccgacccctgcgtctgcgcactggcacg 50
               ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1781543 ggccgcacgctctcacccggcgccgacccctgcgtctgcgcactggcacg 1781592


>ref|AC_000048.1| Homo sapiens chromosome 5, alternate assembly Hs_Celera, whole genome
               shotgun sequence
          Length = 176344326

 Score = 99.6 bits (50), Expect = 3e-19
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                                 
Query: 1       ggccgcacgctctcacccggcgccgacccctgcgtctgcgcactggcacg 50
               ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1836572 ggccgcacgctctcacccggcgccgacccctgcgtctgcgcactggcacg 1836621

blast search - nt

left

>ref|NG_002831.2| Homo sapiens mitochondrial ribosomal protein L36 pseudogene 1
           (MRPL36P1) on chromosome 2
          Length = 798

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                             
Query: 1   tataaaaagagttgccatgttgtggtgaatccggccgcgcgctctcaccc 50
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tataaaaagagttgccatgttgtggtgaatccggccgcgcgctctcaccc 131


>gb|AC016700.8| Homo sapiens BAC clone RP11-175A7 from 2, complete sequence
          Length = 177995

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                               
Query: 1     tataaaaagagttgccatgttgtggtgaatccggccgcgcgctctcaccc 50
             ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18915 tataaaaagagttgccatgttgtggtgaatccggccgcgcgctctcaccc 18866


>ref|XM_517616.2| PREDICTED: Pan troglodytes similar to putative BRCA1-interacting
           protein (LOC461704), mRNA
          Length = 640

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Minus

                                                             
Query: 1   tataaaaagagttgccatgttgtggtgaatccggccgcgcgctctcaccc 50
           |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 111 tataaaaagatttgccatgttgtggtgaatccggccgcgcgctctcaccc 62


>ref|XM_002815396.1| PREDICTED: Pongo abelii 39S ribosomal protein L36,
           mitochondrial-like (LOC100437496), mRNA
          Length = 644

 Score = 89.7 bits (45), Expect = 1e-15
 Identities = 48/49 (97%)
 Strand = Plus / Minus

                                                            
Query: 1   tataaaaagagttgccatgttgtggtgaatccggccgcgcgctctcacc 49
           |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 112 tataaaaagatttgccatgttgtggtgaatccggccgcgcgctctcacc 64

right

>ref|NG_013354.1| Homo sapiens NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa
            (NADH-coenzyme Q reductase) (NDUFS6), RefSeqGene on
            chromosome 5
          Length = 21670

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1    ggccgcacgctctcacccggcgccgacccctgcgtctgcgcactggcacg 50
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3413 ggccgcacgctctcacccggcgccgacccctgcgtctgcgcactggcacg 3462


>gb|AC026443.4| Homo sapiens chromosome 5 clone CTD-2296H22, complete sequence
          Length = 118562

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                               
Query: 1     ggccgcacgctctcacccggcgccgacccctgcgtctgcgcactggcacg 50
             ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68655 ggccgcacgctctcacccggcgccgacccctgcgtctgcgcactggcacg 68704


>ref|NM_032479.3| Homo sapiens mitochondrial ribosomal protein L36 (MRPL36),
          nuclear gene encoding mitochondrial protein, mRNA
          Length = 626

 Score = 97.6 bits (49), Expect = 4e-18
 Identities = 49/49 (100%)
 Strand = Plus / Minus

                                                           
Query: 1  ggccgcacgctctcacccggcgccgacccctgcgtctgcgcactggcac 49
          |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 ggccgcacgctctcacccggcgccgacccctgcgtctgcgcactggcac 1


>ref|XM_001175244.1| PREDICTED: Pan troglodytes similar to putative BRCA1-interacting
           protein (LOC750868), mRNA
          Length = 1383

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 49/50 (98%)
 Strand = Plus / Minus

                                                             
Query: 1   ggccgcacgctctcacccggcgccgacccctgcgtctgcgcactggcacg 50
           ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ggccgcacgatctcacccggcgccgacccctgcgtctgcgcactggcacg 369


>dbj|AK312001.1| Homo sapiens cDNA, FLJ92275, Homo sapiens mitochondrial ribosomal
          protein L36 (MRPL36), nucleargene encoding
          mitochondrial protein, mRNA
          Length = 373

 Score = 87.7 bits (44), Expect = 4e-15
 Identities = 44/44 (100%)
 Strand = Plus / Minus

                                                      
Query: 1  ggccgcacgctctcacccggcgccgacccctgcgtctgcgcact 44
          ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 ggccgcacgctctcacccggcgccgacccctgcgtctgcgcact 4


>gb|BC104652.1| Homo sapiens mitochondrial ribosomal protein L36, mRNA (cDNA
          clone MGC:104245 IMAGE:6738291), complete cds
          Length = 642

 Score = 87.7 bits (44), Expect = 4e-15
 Identities = 44/44 (100%)
 Strand = Plus / Minus

                                                      
Query: 1  ggccgcacgctctcacccggcgccgacccctgcgtctgcgcact 44
          ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 ggccgcacgctctcacccggcgccgacccctgcgtctgcgcact 5


>ref|XM_002815393.1| PREDICTED: Pongo abelii 39S ribosomal protein L36,
           mitochondrial-like, transcript variant 2 (LOC100436235),
           mRNA
          Length = 683

 Score = 83.8 bits (42), Expect = 6e-14
 Identities = 48/50 (96%)
 Strand = Plus / Minus

                                                             
Query: 1   ggccgcacgctctcacccggcgccgacccctgcgtctgcgcactggcacg 50
           |||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 100 ggccgcgcgctctcaccctgcgccgacccctgcgtctgcgcactggcacg 51


>gb|AF155653.1|AF155653 Human putative ribosomal protein L36 mRNA
          Length = 613

 Score = 77.8 bits (39), Expect = 4e-12
 Identities = 39/39 (100%)
 Strand = Plus / Minus

                                                 
Query: 1  ggccgcacgctctcacccggcgccgacccctgcgtctgc 39
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 39 ggccgcacgctctcacccggcgccgacccctgcgtctgc 1


>gb|BC020642.1| Homo sapiens mitochondrial ribosomal protein L36, mRNA (cDNA
          clone MGC:22294 IMAGE:4774879), complete cds
          Length = 453

 Score = 77.8 bits (39), Expect = 4e-12
 Identities = 39/39 (100%)
 Strand = Plus / Minus

                                                 
Query: 1  ggccgcacgctctcacccggcgccgacccctgcgtctgc 39
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 39 ggccgcacgctctcacccggcgccgacccctgcgtctgc 1


>ref|XM_002815396.1| PREDICTED: Pongo abelii 39S ribosomal protein L36,
          mitochondrial-like (LOC100437496), mRNA
          Length = 644

 Score = 75.8 bits (38), Expect = 2e-11
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                            
Query: 1  ggccgcacgctctcacccggcgccgacccctgcgtctgcgcactggcacg 50
          |||||| ||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 80 ggccgcgcgctctcaccttgcgccgacccctgcgtctgcgcactggcacg 31


>gb|EF036487.1| Homo sapiens mitochondrial ribosomal protein L36 mRNA, complete
          cds; nuclear gene for mitochondrial product
          Length = 454

 Score = 75.8 bits (38), Expect = 2e-11
 Identities = 38/38 (100%)
 Strand = Plus / Minus

                                                
Query: 1  ggccgcacgctctcacccggcgccgacccctgcgtctg 38
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 45 ggccgcacgctctcacccggcgccgacccctgcgtctg 8

reads

chr2 chr2 70329998 70329948 50m                              AC
chr2 chr2 70329994 70329944 50m                              ACGTAC
chr2 chr2 70329991 70329941 50m                              ACGTACCAC
chr2 chr2 70329987 70329937 50m                              ACGTACCACTGAC
chr2 chr2 70329937 70329887 50m                                           CCCGCCTCTTCACCAGGTAACAGTCCTTGCAGCGCTTCTTAAGGACAGTC
chr2 chr2 70329934 70329884 50m                                              GCCTCTTCACCAGGTAACAGTCCTTGCAGCGCTTCTTAAGGACAGTCTTG
chr2 chr2 70329928 70329878 50m                                                    TCACCAGGTAACAGTCCTTGCAGCGCTTCTTAAGGACAGTCTTGTTTTTG
chr2 chr2 70329925 70329875 50m                                                       CCAGGTAACAGTCCTTGCAGCGCTTCTTAAGGACAGTCTTGTTTTTGAAC
chr2 chr2 70329922 70329872 50m                                                          GGTAACAGTCCTTGCAGCGCTTCTTAAGGACAGTCTTGTTTTTGAACCCC
chr2 chr2 70329906 70329856 50m                                                                          GCGCTTCTTAAGGACAGTCTTGTTTTTGAACCCCAGCGCAGGCAGCAGGT
chr2 chr2 70329843 70329793 50m                                                                                                                                         GGGTGAGAGAAGTGAGCGCACTGCTGCCCCGGGTTCCACAGCCACGGGGG
chr2 chr2 70329821 70329771 50m                                                                                                                                                               GCTGCCCCGGGTTCCACAGCCACGGGGGCTGCACCTCGAATGGATCCAAA
chr2 chr2 70329814 70329764 50m                                                                                                                                                                      CGGGTTCCACAGCCACGGGGGCTGCACCTCGAATGGATCCAAATAGAAAT
chr2 chr2 70329798 70329748 50m                                                                                                                                                                                      GGGGGCTGCACCTCGAATGGATCCAAATAGAAATGTGGAGAGGGCTCGAG
chr2 chr2 70329787 70329737 50m                                                                                                                                                                                                 CTCGAATGGATCCAAATAGAAATGTGGAGAGGGCTCGAGGCTTCACCGTG
chr2 chr2 70329779 70329729 50m                                                                                                                                                                                                         GATCCAAATAGAAATGTGGAGAGGGCTCGAGGCTTCACCGTGTGACGACT
chr2 chr2 70329714 70329664 50m                                                                                                                                                                                                                                                                          GTTCACCATTTTCCTTATAAAAAGATTTGCCATGTTGTGGTGAATCCGGC
chr2 chr2 70329709 70329659 50m                                                                                                                                                                                                                                                                               CCATTTTCCTTATAAAAAGATTTGCCATGTTGTGGTGAATCCGGCCGCAC
chr2 chr2 70329705 70329655 50m                                                                                                                                                                                                                                                                                   TTTCCTTATAAAAAGATTTGCCATGTTGTGGTGAATCCGGCCGCACGCTC
chr2 chr2 70329701 70329651 50m                                                                                                                                                                                                                                                                                       CTTATAAAAAGATTTGCCATGTTGTGGTGAATCCGGCCGCACGCTCTCAC
chr2 chr5 70329689 1799917 40m1799908F10M                                                                                                                                                                                                                                                                                         TTTGCCATGTTGTGGTGAATCCGGCCGCACGCTCTCACCC GGCCGCACGC
chr2 chr5 70329684 1799922 35m1799908F15M                                                                                                                                                                                                                                                                                              CATGTTGTGGTGAATCCGGCCGCACGCTCTCACCC GGCCGCACGCTCTCA
chr2 chr5 70329682 1799924 33m1799908F17M                                                                                                                                                                                                                                                                                                TGTTGTGGTGAATCCGGCCGCACGCTCTCACCC GGCCGCACGCTCTCCCC
chr2 chr5 70329680 1799926 31m1799908F19M                                                                                                                                                                                                                                                                                                  TTGTGGTGAATCCGGCCGCACGCTCTCACCC GGCCGCACGCTCTCACCCG
chr2 chr5 70329677 1799929 28m1799908F22M                                                                                                                                                                                                                                                                                                     TGGTGAATCCGGCCGCACGCTCTCACCC GGCCGCACGCTCTCACCCGGCG
chr2 chr5 70329676 1799930 27m1799908F23M                                                                                                                                                                                                                                                                                                      GGTGAATCCGGCCGCACGCTCTCACCC GGCCGCACGCTCTCACCCGGCGC
chr5 chr5 1799910 1799960 50M                                                                                                                                                                                                                                                                                                                                                 CGCACGCTCTCACCCGGCGCCGACCCCTGCGTCTGCGCACTGGCACGCGG
chr5 chr5 1799919 1799969 50M                                                                                                                                                                                                                                                                                                                                                          TCACCCGGCGCCGACCCCTGCGTCTGCGCACTGGCACGCGGACGCTGCTG
chr5 chr5 1799927 1799977 50M                                                                                                                                                                                                                                                                                                                                                                  CGCCGACCCCTGCGTCTGCGCACTGGCACGCGGACGCTGCTGCCAGGAAG
chr5 chr5 1800088 1800138 50M                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GTGCGCACTCTGCGGGCCACCGGGATCGTCGTGCTGTTGGGAGCGCTCTC

14 pairs

226:-1078
238:-1075
299:-1146
304:-1141
316:-1146
317:-1148
319:-1156
317:-1163
333:-1166
392:-1231
392:-1238
392:-1238
390:-1256
392:-1257

Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer