InputData.h

// Copyright (c) 2003, The Institute for Genomic Research (TIGR), Rockville,
// Maryland, U.S.A.  All rights reserved.
#ifndef INPUTDATA_H
#define INPUTDATA_H

#include <string>
#include "Prediction.h"
#include "DataDescrip.h"
#include <vector>
#include <list>

using std::vector;
using std::list;

class CustomScore;
class DataSetAbstractProduct;

class InputData {
public:
  typedef vector<Prediction*>::const_iterator const_iterator;

  InputData(); 
  ~InputData();

  const_iterator begin() const { return _data.begin(); }
  const_iterator end() const { return _data.end(); }
  int getEnd5() const { assert(_data[0]); return _data[0]->getEnd5(); }
  const string& getTypeStr() const;
  friend std::ostream& operator<<(std::ostream&, const InputData&);    
  
  void setTrainExamples(DataSetAbstractProduct* dp) { _trainExamples = dp; }
  DataSetAbstractProduct* getTrainExamples() { return _trainExamples; }

  void readEvidenceFile(const string&, const string&, vector<DataDescrip*>&);

 private:
  vector<Prediction*> _data;
  list<DataSetAbstractProduct*> _stopLeak;
  DataSetAbstractProduct* _trainExamples;
};

#endif // INPUTDATA_H