| getScore(unsigned, dsu::Strand_t strnd) const (defined in RegionPrediction) | RegionPrediction | [inline] |
| getScores(dsu::Strand_t strnd) const (defined in RegionPrediction) | RegionPrediction | [inline] |
| getSeq() const (defined in RegionPrediction) | RegionPrediction | [inline] |
| getTypeStr() const (defined in RegionPrediction) | RegionPrediction | |
| hasStart(dsu::Strand_t strnd) const | RegionPrediction | [inline] |
| hasStop(dsu::Strand_t strnd) const | RegionPrediction | [inline] |
| insert(const PlaceHolder *) | RegionPrediction | [virtual] |
| is_igr(const RegionPrediction &, const RegionPrediction &, dsu::Strand_t, int) (defined in RegionPrediction) | RegionPrediction | [static] |
| is_intron(const RegionPrediction &, const RegionPrediction &, dsu::Strand_t) (defined in RegionPrediction) | RegionPrediction | [static] |
| isAccpBndry(dsu::Strand_t strnd) const | RegionPrediction | [inline] |
| isDonrBndry(dsu::Strand_t strnd) const | RegionPrediction | [inline] |
| isEndOfSeq() const | RegionPrediction | [inline] |
| isValid(EvScores::Bnd_t, dsu::Strand_t) const (defined in RegionPrediction) | RegionPrediction | |
| isValidAcceptorSignals(dsu::Strand_t strnd) const (defined in RegionPrediction) | RegionPrediction | [inline] |
| isValidDonorSignals(dsu::Strand_t strnd) const (defined in RegionPrediction) | RegionPrediction | [inline] |
| noData() const (defined in RegionPrediction) | RegionPrediction | |
| noStrndData(dsu::Strand_t) const (defined in RegionPrediction) | RegionPrediction | |
| print(std::ostream &, const CustomScore &) const (defined in RegionPrediction) | RegionPrediction | [virtual] |
| RegionPrediction(const SeqLoc &, const string &) (defined in RegionPrediction) | RegionPrediction | |
| score(const CustomScore &, const string &) | RegionPrediction | |
| scoreHelp(const string &, dsu::Strand_t) (defined in RegionPrediction) | RegionPrediction | |
| setScores(dsu::Strand_t, const EvScores &) (defined in RegionPrediction) | RegionPrediction | |
| storeRelaventData(InputData::const_iterator &, const InputData::const_iterator &) (defined in RegionPrediction) | RegionPrediction | |
| ~RegionPrediction() (defined in RegionPrediction) | RegionPrediction | |