| getClosestEnd3(int, int) const | SeqLoc | [inline, virtual] |
| getClosestEnd5(int) const | SeqLoc | [inline, virtual] |
| getEnd3() const | SeqLoc | [inline] |
| getEnd5() const | SeqLoc | [inline] |
| getStrnd() const | SeqLoc | [inline] |
| getTypeStr() const | SeqLoc | [virtual] |
| inRange(int) const | SeqLoc | |
| isActualOverlap(int, int) const | SeqLoc | [inline, virtual] |
| isEnd3Set() const | SeqLoc | |
| isEnd5Set() const | SeqLoc | |
| isOverlap (defined in SeqLoc) | SeqLoc | [friend] |
| length() const | SeqLoc | [inline] |
| operator< (defined in SeqLoc) | SeqLoc | [friend] |
| operator<< (defined in SeqLoc) | SeqLoc | [friend] |
| operator==(const SeqLoc &sl) const | SeqLoc | [inline] |
| print(std::ostream &, const string &="") const | SeqLoc | [virtual] |
| SeqLoc(dsu::Strand_t, int, int) | SeqLoc | |
| SeqLoc(const SeqLoc &) | SeqLoc | |
| setEnd3(int) | SeqLoc | |
| setEnd5(int) | SeqLoc | |
| setStrnd(dsu::Strand_t strnd) | SeqLoc | [inline] |
| ~SeqLoc() | SeqLoc | [inline, virtual] |