References

[1] Zhou, L., I. Mihai, L. Florea (2010) "Spaced seeds for cross-species cDNA-to-genome sequence alignment", Communications in Information and Systems 10(2):115-136. [Full text]

[2] Zhou, L., M. Pertea, L. Florea (2009) "Detecting coding regions in sequence alignments with spaced seeds", Workshop in Algorithms for Bioinformatics - WABI 2009, Philadelphia, PA (poster).

[3] Zhou, L., M. Pertea, A. Delcher, L. Florea (2009) "Sim4cc: A cross-species spliced alignment program", Nucleic Acids Res. 37(11):e80. [Medline]

[4] Zhou, L., L. Florea (2008) "Sensitive and specific cross-species cDNA-to-genome alignment with spaced seeds", 6th Annual Rocky Mountain Bioinformatics Conference, Aspen, CO.

[5] L. Zhou, I. Mihai, L. Florea (2008) "Effective cluster-based seed design for cross-species sequence comparison", Bioinformatics 24(24), 2926-7. [Medline]

[6] L. Zhou, A. Delcher, M. Pertea, L. Florea (2007) "Universal spaced seeds: Improving the accuracy of cross-species cDNA-to-genome alignment", 16th Annual International Conference on Intelligent Systems for Molecular Biology - ISMB 2008, Toronto, CA.

[7] L. Zhou, J. Stanton, L. Florea (2008) "Universal seeds for cDNA-to-genome comparison", BMC Bioinformatics, 9:36. [Medline]

[8] L. Zhou, A. Delcher, M. Pertea, L. Florea (2007) "Universal spaced seeds: Improving the accuracy of cross-species cDNA-to-genome alignment", Cold Spring Harbor Meeting - Genome Informatics, Abstracts, 122.

[9] L. Zhou and L. Florea (2007) "Designing sensitive and specific spaced seeds for cross-species mRNA-to-genome alignment", J. Comput. Biol. 14(2), 113-130. [Medline]

[10] L. Zhou and L. Florea (2007) "Good spaced seeds for cross-species mRNA-to-genome alignment", The 7th IEEE International Conference on BioInformatics and BioEngineering -BIBE 2007, Harvard University Medical School, Boston MA.

[11] L. Zhou and L. Florea (2007) "Good spaced seeds for cDNA-to-genome alignments", GWU School of Engineering and Applied Sciences R & D Showcase, Washington DC.

[12] L. Zhou and L. Florea (2006) "Designing spaced seeds for accurate cross-species cDNA-to-genome alignment with varying evolutionary distances", SMBE 2006 - Genomes, Evolution and Bioinformatics, Arizona State University, Tempe AZ.

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