Quick Links

• Genome assembly improvement with RNA-seq reads: Rascaf [Instructions,Code]
• Transcript assembly and alternative splicing: CLASS2 [Publication,Instructions,Code]
• Error correction for RNA-seq reads: Rcorrector [Publication, Code]
• Prediction and functional analysis of vmiRNAs [Publication]
• Transcript assembly of RNA-seq reads: CLASS [Publication,Code]
• Alternative splicing events from RNA-seq: ASprofile [Publication, Code]
• RNA editing from RNA-seq: rddChecker [Instructions,Code]
• Cross-species spliced alignment: Sim4cc [Publication,Code] and Sim4db [Publication,Instructions,Code]
• Gene structure comparison: GenComp [Publication, Code]
• Bacterial alignment visualization: Enterix [Publications]
• Mathematically optimal spaced seeds [Publications,Code]
• Alternative splicing and Evolution [References]
• High-throughput cDNA-to-genome alignment: ESTmapper [Publication, Code]
• Gene and alternative splicing annotation: AIR [Publication, Code]