| add_introns() | DataSetAbstractProduct | [virtual] |
| add_introns_help() (defined in DataSetAbstractProduct) | DataSetAbstractProduct | [protected, virtual] |
| begin() | DataSetAbstractProduct | |
| begin() const | DataSetAbstractProduct | |
| const_iterator typedef (defined in DataSetAbstractProduct) | DataSetAbstractProduct | |
| DataSetAbstractProduct(const SeqLoc &, int, const string &, AnnotationScore) | DataSetAbstractProduct | |
| DataStorageType typedef (defined in Prediction) | Prediction | |
| del() | DataSetAbstractProduct | [virtual] |
| del_temp() | DataSetAbstractProduct | [inline, virtual] |
| empty() const | DataSetAbstractProduct | [inline] |
| end() const | DataSetAbstractProduct | |
| end() | DataSetAbstractProduct | |
| getClosestEnd3(int, int) const | SeqLoc | [inline, virtual] |
| getClosestEnd3Exon(int, int) const (defined in DataSetAbstractProduct) | DataSetAbstractProduct | |
| getClosestEnd5(int) const | DataSetAbstractProduct | [virtual] |
| getClosestEnd5Exon(int) const | DataSetAbstractProduct | |
| getDataSource() const | Prediction | [inline] |
| getEnd3() const | SeqLoc | [inline] |
| getEnd5() const | SeqLoc | [inline] |
| getIntronBoundaries(int, int) const (defined in DataSetAbstractProduct) | DataSetAbstractProduct | |
| getLast() const | DataSetAbstractProduct | |
| getListPos(const Prediction *) const (defined in DataSetAbstractProduct) | DataSetAbstractProduct | |
| getModelId() const | Prediction | [inline] |
| getRelatedPrediction(int, int, std::list< const Prediction * > &) const | DataSetAbstractProduct | |
| getRelatedPrediction(int) const (defined in DataSetAbstractProduct) | DataSetAbstractProduct | |
| getRelatedPrediction3(int, std::list< const Prediction * > &) const | DataSetAbstractProduct | |
| getRelatedPrediction5(int, std::list< const Prediction * > &) const | DataSetAbstractProduct | |
| getRelatedPredictionInterval(int, int) const (defined in DataSetAbstractProduct) | DataSetAbstractProduct | |
| getScore() const | Prediction | |
| getStrnd() const | SeqLoc | [inline] |
| getTypeStr() const | SeqLoc | [virtual] |
| inRange(int) const | SeqLoc | |
| insert(Prediction *) | DataSetAbstractProduct | |
| isActualOverlap(int, int) const | SeqLoc | [inline, virtual] |
| isEnd3Set() const | SeqLoc | |
| isEnd5Set() const | SeqLoc | |
| isOverlap (defined in SeqLoc) | SeqLoc | [friend] |
| iterator typedef (defined in DataSetAbstractProduct) | DataSetAbstractProduct | |
| length() const | SeqLoc | [inline] |
| lnkSeqLoc | DataSetAbstractProduct | [protected] |
| makePlaceHolders() const | DataSetAbstractProduct | [virtual] |
| operator<< (defined in DataSetAbstractProduct) | DataSetAbstractProduct | [friend] |
| operator==(const SeqLoc &sl) const | SeqLoc | [inline] |
| Prediction(const SeqLoc &sl, AnnotationScore d, int modelId, const string &str) | Prediction | [inline] |
| Prediction(const Prediction &pred) | Prediction | [inline] |
| print(std::ostream &, const string &) const | DataSetAbstractProduct | [virtual] |
| SeqLoc(dsu::Strand_t, int, int) | SeqLoc | |
| SeqLoc(const SeqLoc &) | SeqLoc | |
| setEnd3(int) | SeqLoc | |
| setEnd5(int) | SeqLoc | |
| setScore(const AnnotationScore &s) | Prediction | [inline] |
| setStrnd(dsu::Strand_t strnd) | SeqLoc | [inline] |
| size() const | DataSetAbstractProduct | |
| sort() (defined in DataSetAbstractProduct) | DataSetAbstractProduct | |
| sort_insert(Prediction *) (defined in DataSetAbstractProduct) | DataSetAbstractProduct | |
| ~DataSetAbstractProduct() | DataSetAbstractProduct | [virtual] |
| ~Prediction() | Prediction | [inline, virtual] |
| ~SeqLoc() | SeqLoc | [inline, virtual] |