GenePrediction Member List

This is the complete list of members for GenePrediction, including all inherited members.

DataStorageType typedef (defined in Prediction)	Prediction
del() (defined in GenePrediction)	GenePrediction	[inline, virtual]
GenePrediction(const SeqLoc &sl, AnnotationScore d, int modelId, const string &source, const GeneModelType &mt, int frame=-1)	GenePrediction	[inline]
getClosestEnd3(int, int) const	SeqLoc	[inline, virtual]
getClosestEnd5(int) const	SeqLoc	[inline, virtual]
getDataSource() const	Prediction	[inline]
getEnd3() const	SeqLoc	[inline]
getEnd5() const	SeqLoc	[inline]
getFrame() const	GenePrediction	[inline]
getModelId() const	Prediction	[inline]
getScore() const	Prediction
getScoreIdx() const	GenePrediction
getStrnd() const	SeqLoc	[inline]
getTypeStr() const	GenePrediction	[virtual]
inRange(int) const	SeqLoc
isActualOverlap(int, int) const	SeqLoc	[inline, virtual]
isEnd3Set() const	SeqLoc
isEnd5Set() const	SeqLoc
isOverlap (defined in SeqLoc)	SeqLoc	[friend]
length() const	SeqLoc	[inline]
makePlaceHolders() const	GenePrediction	[virtual]
NOT_GENE_ID (defined in GenePrediction)	GenePrediction	[static]
NUM_ANNOTATION_SCORED_TYPES (defined in GenePrediction)	GenePrediction	[static]
operator==(const SeqLoc &sl) const	SeqLoc	[inline]
Prediction(const SeqLoc &sl, AnnotationScore d, int modelId, const string &str)	Prediction	[inline]
Prediction(const Prediction &pred)	Prediction	[inline]
print(std::ostream &, const std::string &) const	GenePrediction
Prediction::print(std::ostream &os, const string &str) const	Prediction	[virtual]
SeqLoc(dsu::Strand_t, int, int)	SeqLoc
SeqLoc(const SeqLoc &)	SeqLoc
setEnd3(int)	SeqLoc
setEnd5(int)	SeqLoc
setScore(const AnnotationScore &s)	Prediction	[inline]
setStrnd(dsu::Strand_t strnd)	SeqLoc	[inline]
~GenePrediction()	GenePrediction	[inline, virtual]
~Prediction()	Prediction	[inline, virtual]
~SeqLoc()	SeqLoc	[inline, virtual]