GenePrediction.h

// Copyright (c) 2003, The Institute for Genomic Research (TIGR), Rockville,
// Maryland, U.S.A.  All rights reserved.
#ifndef GENEPREDICTION_H
#define GENEPREDICTION_H

#include "Prediction.h"
class GeneModelType;

class GenePrediction : public Prediction {
public:
  GenePrediction(const SeqLoc& sl, AnnotationScore d, int modelId, const string& source, const GeneModelType& mt, int frame = -1) :
    Prediction(sl,d,modelId,source), _modelType(mt), _frame(frame) { }

  virtual ~GenePrediction() { }

  virtual void del() { }

  void print(std::ostream&, const std::string&) const;

  const string& getTypeStr() const;

  const int getScoreIdx() const;

  DataStorageType* makePlaceHolders() const ;

  int getFrame() const { return _frame; }

  static const int NUM_ANNOTATION_SCORED_TYPES = 4;
  static const int NOT_GENE_ID = 4;
private:
  const GeneModelType& _modelType;
  int _frame;
};

#endif // GENEPREDICTION_H