#include <Options.h>
Collaboration diagram for Options:
Public Member Functions | |
bool | isExonDistr () const |
bool | isLinComb () const |
void | setIntronFalse () |
bool | useIntron () const |
bool | isVerbose () const |
bool | doTraining () const |
Static Public Member Functions | |
void | createInstance (int argc, char **argv, const string &id) |
Options * | getInstance () |
Public Attributes | |
int | _cutOff |
bool | quit |
bool | _forceModels |
string | m_fastaFile |
string | m_evidenceListFile |
string | _outputGeneModelFile |
string | _matrixFile |
string | _vecFile |
string | _dtFile |
string | _exonDistrFile |
bool | _train |
int | _subEnd5 |
int | _subEnd3 |
int | _trainOffSet |
string | _hmmFile |
Protected Member Functions | |
Options (int argc, char **argv, const string &) | |
Friends | |
int | main (int, char **) |
allow individual programs (defined by the main) access private variables to customize program behavior |
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