====================================================================
Deep learning framework to train your own SpliceAI model
====================================================================
██████╗ ██████╗ ███████╗███╗ ██╗███████╗██████╗ ██╗ ██╗ ██████╗███████╗ █████╗ ██╗
██╔═══██╗██╔══██╗██╔════╝████╗ ██║██╔════╝██╔══██╗██║ ██║██╔════╝██╔════╝██╔══██╗██║
██║ ██║██████╔╝█████╗ ██╔██╗ ██║███████╗██████╔╝██║ ██║██║ █████╗ ███████║██║
██║ ██║██╔═══╝ ██╔══╝ ██║╚██╗██║╚════██║██╔═══╝ ██║ ██║██║ ██╔══╝ ██╔══██║██║
╚██████╔╝██║ ███████╗██║ ╚████║███████║██║ ███████╗██║╚██████╗███████╗██║ ██║██║
╚═════╝ ╚═╝ ╚══════╝╚═╝ ╚═══╝╚══════╝╚═╝ ╚══════╝╚═╝ ╚═════╝╚══════╝╚═╝ ╚═╝╚═╝
0.0.1
usage: openspliceai [-h] {create-data,train,test,calibrate,transfer,predict,variant} ...
OpenSpliceAI toolkit to help you retrain your own splice site predictor
positional arguments:
{create-data,train,test,calibrate,transfer,predict,variant}
Subcommands: create-data, train, test, calibrate, predict, transfer, variant
create-data Create dataset for your genome for SpliceAI model training
train Train the SpliceAI model
test Test the SpliceAI model
calibrate Calibrate the SpliceAI model
transfer transfer a pre-trained SpliceAI model on new data.
predict Predict splice sites in a given sequence using the SpliceAI model
variant Label genetic variations with their predicted effects on splicing.
optional arguments:
-h, --help show this help message and exit
